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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0808900-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:34356896:34357450:1 gene:Os01g0808900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 4 description:Similar to SigA binding protein. (Os01t0808900-00)
Sequence

ATGGATCGGCAGAGGCAGCAGAGCTCCAGGGGCAATGCTACTGCAACGAGGGGTGGTGGG
TCGTCGGGGAAGGGTGGTGGTGGTGGTGTCGGGAAGGCGGCGGGGAAGAAGCCGATCAAG
GTGGTGTACATCTCCAACCCCATGCGGGTCAAGACCAGCGCCGCCGGGTTCCGCGCCCTC
GTGCAGGAGCTCACCGGCCGCAACGCCGACCCTTCCAAGTACAGCCCCCGCGCCTCCGCC
GACGACGACGACGGCGGCGGCGGCGGCGGCGGCGGCGAGCTGGCCGCCGCCAGTGACGGC
GCGGGAGAGCCCGGGCCCGGCGCCGCCGCGGCCTCGCCCGACACCGGCGCCGCAGCCGCC
AGCGACGCCGCCGACGCCCTCGTGGCGGCGGGTCATCCGGCGGCGGCGACGTTCGACGAC
GAAGGCGGCGGTGGCGGCGGGGGATACTACGACGACGACGACGACGACATCTTCAGGTCG
CAGCTGCTGGACACCAGCTACTCGGTGTTCTCGCCGCCGACGCTGCTCTACGACCACCCG
CACAGCAAGGTGTAG

Peptide Sequence

PEP ID

Os01t0808900-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:34356896:34357450:1 gene:Os01g0808900 transcript:Os01t0808900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 4 description:Similar to SigA binding protein. (Os01t0808900-00)
Sequence

MDRQRQQSSRGNATATRGGGSSGKGGGGGVGKAAGKKPIKVVYISNPMRVKTSAAGFRAL
VQELTGRNADPSKYSPRASADDDDGGGGGGGGELAAASDGAGEPGPGAAAASPDTGAAAA
SDAADALVAAGHPAAATFDDEGGGGGGGYYDDDDDDIFRSQLLDTSYSVFSPPTLLYDHP
HSKV

Transcript Sequence

Transcript ID

Os01t0808900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:34356896:34357450:1 gene:Os01g0808900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VQ motif-containing protein 4 description:Similar to SigA binding protein. (Os01t0808900-00)
Sequence

ATGGATCGGCAGAGGCAGCAGAGCTCCAGGGGCAATGCTACTGCAACGAGGGGTGGTGGG
TCGTCGGGGAAGGGTGGTGGTGGTGGTGTCGGGAAGGCGGCGGGGAAGAAGCCGATCAAG
GTGGTGTACATCTCCAACCCCATGCGGGTCAAGACCAGCGCCGCCGGGTTCCGCGCCCTC
GTGCAGGAGCTCACCGGCCGCAACGCCGACCCTTCCAAGTACAGCCCCCGCGCCTCCGCC
GACGACGACGACGGCGGCGGCGGCGGCGGCGGCGGCGAGCTGGCCGCCGCCAGTGACGGC
GCGGGAGAGCCCGGGCCCGGCGCCGCCGCGGCCTCGCCCGACACCGGCGCCGCAGCCGCC
AGCGACGCCGCCGACGCCCTCGTGGCGGCGGGTCATCCGGCGGCGGCGACGTTCGACGAC
GAAGGCGGCGGTGGCGGCGGGGGATACTACGACGACGACGACGACGACATCTTCAGGTCG
CAGCTGCTGGACACCAGCTACTCGGTGTTCTCGCCGCCGACGCTGCTCTACGACCACCCG
CACAGCAAGGTGTAG