Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0805700-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:34153483:34159963:-1 gene:Os01g0805700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plectin-related. (Os01t0805700-01);Similar to plectin-related. (Os01t0805700-02)
Sequence

ATGACAAGGGTCATCCATGACTCTGGAGAAGGCATGCAGAAGGAGGCACTTGCTATGGTA
TCTTCTGATGTTAACTTCCCCAAGGGCCATTTTCCAGACTACAAGATTGGGCCAAACAAC
CAAATCATTGATCCAGAAGAGATACATGAGGCTGTACCTTTGAAGGAGATCGTTGCGAAG
GAAACAGCACAGCTGCTAGAGCAGCGAAGGCGGCTTTCAGTGCGTGACCTGAAGGAGAAG
TTTGAGAAGGGTCTATCAGGTGCCTCAAAACTGTCTGAAGAGGCTAAGCGCCGAGAAGCA
GCTTCGTTGGACAGGCAGGTTCTTCTGAAGAAGCTTAGAGATGTTTTAGACACTCTGAAA
GGCCGTGTGGCTGGTAGAAATAGAGACGATGCTGATGAAGCTATTTCACTGGTGGAAGCA
TTAGCAGTCCAGCTGACCCAAAGAGAAGGGGAGTTAATATATGAAAAGGCTGAAGTAAAG
AAGTTAGCTAGCTTCCTCAAGCAGGCTACTGAAGATGCCCGGAAGGTGGCAGAGGAGGAA
AGGGCTCTTGCATTAGCGGAAATTGAGAAGGCCAGAACTGCAATTGCTATAGTCGAGAAA
GGATTGCAGGAGCATGATGCAGCATCAAGTAGCAGGGAAAAGGAGGAGATAGAGGGACTC
AGGAAAGAGGTCCGTGAGGCTAGAAGAATAAAAATGCTACACCAGCCAAGCAAGGTAATG
GACATGGAATTTGAGCTTAAGGCACTGCGAACTCTCATTGCAGAGAAAAATCAGCTTTGC
AATCAGCTAATGAAAGAGCTTGCAATGATCAAGAGGCTAGAAGAAGATAGCTCTGACCTC
TATGATCTTGAAGGTTCTGATATCCTTGGATCACAGTTTTGTATTATCCCTCGATTTGAT
GATGCTCCAGACATCAGCAGCTGTCCAACTCAATGGTACCGTGTAATTTCTGGAGGCAAT
AGAAATCTTATATTGGGAGCAACAAAACCTACATATGCTCCAGAACCATTTGATGTTGGC
CGACTGTTACAGGCAGAGATAGTTTTAAATGCAGAGAAAGTTACGATACAAACAATGGGA
CCTATAAATCCTGCTGCCGGACTGGAACATTATGTGGAGTCTCTAATGAAAAGAGCAGAT
GTGGAGTTTAATGTGGTTGTCACCCAAATGAATGGGAATGATTACTCATCGAACTCTGTC
CATGCATTTCATATCGGAAAAATGAGAATAAAGCTTCGAAAAGGATGGTCTACAAAAGCA
AGAGAGTCATACTCGACCACAATGAAGTTGTGTGGGAGCCGTGGTGGGGGTAATGCTGCA
GCTACGGCAGTTTTCTGGCAGGCAAGGAAAGGCCTGTCCTACACCTTAGCTTTTGAAACG
GACAGGGATAGGAACGCAGCAATCATGCTTGCTCGTAAATTTGCCTCAAATTGCAATATT
ACGCTCACTGGTCCAGGTGATGAAGTTCATGCTGGTAGCTGA

Peptide Sequence

PEP ID

Os01t0805700-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:34153483:34159963:-1 gene:Os01g0805700 transcript:Os01t0805700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plectin-related. (Os01t0805700-01);Similar to plectin-related. (Os01t0805700-02)
Sequence

MTRVIHDSGEGMQKEALAMVSSDVNFPKGHFPDYKIGPNNQIIDPEEIHEAVPLKEIVAK
ETAQLLEQRRRLSVRDLKEKFEKGLSGASKLSEEAKRREAASLDRQVLLKKLRDVLDTLK
GRVAGRNRDDADEAISLVEALAVQLTQREGELIYEKAEVKKLASFLKQATEDARKVAEEE
RALALAEIEKARTAIAIVEKGLQEHDAASSSREKEEIEGLRKEVREARRIKMLHQPSKVM
DMEFELKALRTLIAEKNQLCNQLMKELAMIKRLEEDSSDLYDLEGSDILGSQFCIIPRFD
DAPDISSCPTQWYRVISGGNRNLILGATKPTYAPEPFDVGRLLQAEIVLNAEKVTIQTMG
PINPAAGLEHYVESLMKRADVEFNVVVTQMNGNDYSSNSVHAFHIGKMRIKLRKGWSTKA
RESYSTTMKLCGSRGGGNAAATAVFWQARKGLSYTLAFETDRDRNAAIMLARKFASNCNI
TLTGPGDEVHAGS

Transcript Sequence

Transcript ID

Os01t0805700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:34153483:34159963:-1 gene:Os01g0805700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plectin-related. (Os01t0805700-01);Similar to plectin-related. (Os01t0805700-02)
Sequence

TTCCAAAACCACCTCGCGTGGCCTCCTCCGTCCCCTCGCCGGCAGTAGCCTCCTCCTCCG
TTCATCCACCACAGGCGACCGCCCGGCCGCCAGCCTGCCGCCTCGAAGCCTAGGAGGTTC
TCTCGTGCGCGCCCCCCCTCCGCTCCGCCGGTTCGTTCTGGTGGAGTGGACTTGGCGTGG
CGGTGGAGTGGGGGGATCCATCGGGGGCTTGCAGTGATTCCCTTCTTCCTTCGGCTTTCC
TAGCGCCTCCGCCGGCCTAGCCGACCGCCTCGAGAGCCGCCGCACACCTCCGCTTCGCGC
CGCCGGCCCCCGCAAGGAGCCCCCGCACCGCCGACCTCGGGAACCCGCCGCCTCGCGCAC
CTGGGTGGATTGGAGTACTTCAAATGACAAGGGTCATCCATGACTCTGGAGAAGGCATGC
AGAAGGAGGCACTTGCTATGGTATCTTCTGATGTTAACTTCCCCAAGGGCCATTTTCCAG
ACTACAAGATTGGGCCAAACAACCAAATCATTGATCCAGAAGAGATACATGAGGCTGTAC
CTTTGAAGGAGATCGTTGCGAAGGAAACAGCACAGCTGCTAGAGCAGCGAAGGCGGCTTT
CAGTGCGTGACCTGAAGGAGAAGTTTGAGAAGGGTCTATCAGGTGCCTCAAAACTGTCTG
AAGAGGCTAAGCGCCGAGAAGCAGCTTCGTTGGACAGGCAGGTTCTTCTGAAGAAGCTTA
GAGATGTTTTAGACACTCTGAAAGGCCGTGTGGCTGGTAGAAATAGAGACGATGCTGATG
AAGCTATTTCACTGGTGGAAGCATTAGCAGTCCAGCTGACCCAAAGAGAAGGGGAGTTAA
TATATGAAAAGGCTGAAGTAAAGAAGTTAGCTAGCTTCCTCAAGCAGGCTACTGAAGATG
CCCGGAAGGTGGCAGAGGAGGAAAGGGCTCTTGCATTAGCGGAAATTGAGAAGGCCAGAA
CTGCAATTGCTATAGTCGAGAAAGGATTGCAGGAGCATGATGCAGCATCAAGTAGCAGGG
AAAAGGAGGAGATAGAGGGACTCAGGAAAGAGGTCCGTGAGGCTAGAAGAATAAAAATGC
TACACCAGCCAAGCAAGGTAATGGACATGGAATTTGAGCTTAAGGCACTGCGAACTCTCA
TTGCAGAGAAAAATCAGCTTTGCAATCAGCTAATGAAAGAGCTTGCAATGATCAAGAGGC
TAGAAGAAGATAGCTCTGACCTCTATGATCTTGAAGGTTCTGATATCCTTGGATCACAGT
TTTGTATTATCCCTCGATTTGATGATGCTCCAGACATCAGCAGCTGTCCAACTCAATGGT
ACCGTGTAATTTCTGGAGGCAATAGAAATCTTATATTGGGAGCAACAAAACCTACATATG
CTCCAGAACCATTTGATGTTGGCCGACTGTTACAGGCAGAGATAGTTTTAAATGCAGAGA
AAGTTACGATACAAACAATGGGACCTATAAATCCTGCTGCCGGACTGGAACATTATGTGG
AGTCTCTAATGAAAAGAGCAGATGTGGAGTTTAATGTGGTTGTCACCCAAATGAATGGGA
ATGATTACTCATCGAACTCTGTCCATGCATTTCATATCGGAAAAATGAGAATAAAGCTTC
GAAAAGGATGGTCTACAAAAGCAAGAGAGTCATACTCGACCACAATGAAGTTGTGTGGGA
GCCGTGGTGGGGGTAATGCTGCAGCTACGGCAGTTTTCTGGCAGGCAAGGAAAGGCCTGT
CCTACACCTTAGCTTTTGAAACGGACAGGGATAGGAACGCAGCAATCATGCTTGCTCGTA
AATTTGCCTCAAATTGCAATATTACGCTCACTGGTCCAGGTGATGAAGTTCATGCTGGTA
GCTGAATTTACAGTGTTCACGGTGTGACAGCAGGAGTATACATGTAGGCTGTGAATTGTG
TACTGTGTCAGTTTGTGTTTTCGAGAGTAGAGGTTGTACACTAGGCTTTCCTCTTTCAGC
ATACATTCTCAAGGCAATTCTTTTTATTTGCCTGCCAGCAGCTGTTTGTGGTGTTCGTCA
AACATGCTGTGCAAAATGATGATTATTCTTGAGCATTATATCTATTAACGTTCGAAAAGT
GATAGTTTGCTTAGAAGGAGCTTCCCTTGAATAATCAAGAAATGTACAT