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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0801100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:33926609:33929782:1 gene:Os01g0801100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18). (Os01t0801100-01)
Sequence

ATGTCAAGCATGGCAGGCTTGGGAGCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAG
CCCTGGACTAAACTTGTACACAGAGAGAGATTACCCGAGTGGTTTGCATACAATCCAAAG
ACCATGAGGCCTCCACCACTTAGCCATGATACCAAGTGCATGAAGATTTTATCCTGGAAT
ATTAACGGGCTTCATGATGTTGTAACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAG
AGAGAGAATTTTGATGTGTTATGTCTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAA
AAGTTTAAGAATCTGATAGCAGACTATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTT
GGCTATTCAGGGACTGCAGTAATTTCACGGGTTAAACCAATTTCTGTCCAATACGGGATT
GGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTAC
TTGGTAAATGCCTATGTTCCAAATTCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTC
AATAACTGGGATCCGTGTTTCAGCAACTATGTAAAAATACTGGAAAAGTCGAAACCAGTG
ATTGTTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCAGCA
AAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGACAAACTTTTCT
AGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGGCTATACCTTC
TGGGGTGAAAATCAGCGCATAACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCG
GAATCTATTACCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGAC
CACAGTCCAATTGGCCTGGTACTGAAGCTATAG

Peptide Sequence

PEP ID

Os01t0801100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:33926609:33929782:1 gene:Os01g0801100 transcript:Os01t0801100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18). (Os01t0801100-01)
Sequence

MSSMAGLGASQHGYPPRSHEPWTKLVHRERLPEWFAYNPKTMRPPPLSHDTKCMKILSWN
INGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKDVEKFKNLIADYDSYWSCSVSRL
GYSGTAVISRVKPISVQYGIGIREHDHEGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRV
NNWDPCFSNYVKILEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFS
SKGLVDTFRKQHPNAVGYTFWGENQRITNKGWRLDYFLASESITDKVHDSYILPDVSFSD
HSPIGLVLKL

Transcript Sequence

Transcript ID

Os01t0801100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:33926609:33929782:1 gene:Os01g0801100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18). (Os01t0801100-01)
Sequence

ATTCTGCTTTCGTCTCCAGAGGTTCGTCTTCTTCTCCTTCCCCCAGCTTTGCGCCTTCGC
GCAGCCGCGTAATCTCGTCTGCCCTCGCTGCTGGATGTCGGCGATCCGCGCCTCTTCTCA
CCGGCTACAAGAACTGTGGCATTAACAAGGACAAAGATGTCAAGCATGGCAGGCTTGGGA
GCTTCTCAGCATGGATATCCTCCCCGAAGTCATGAGCCCTGGACTAAACTTGTACACAGA
GAGAGATTACCCGAGTGGTTTGCATACAATCCAAAGACCATGAGGCCTCCACCACTTAGC
CATGATACCAAGTGCATGAAGATTTTATCCTGGAATATTAACGGGCTTCATGATGTTGTA
ACGACAAAGGGGTTTTCTGCACGTGACTTGGCTCAGAGAGAGAATTTTGATGTGTTATGT
CTTCAAGAGACACATTTGGAGGAAAAGGATGTTGAAAAGTTTAAGAATCTGATAGCAGAC
TATGACAGCTATTGGTCATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCAGTAATT
TCACGGGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAG
GGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATGCCTATGTTCCAAAT
TCTGGTCGTTTTCTACGTAGACTGAATTACAGGGTCAATAACTGGGATCCGTGTTTCAGC
AACTATGTAAAAATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGT
GCTCGTCAAAGCATTGACATTCACAATCCTCCAGCAAAAACCAAGTCTGCAGGTTTCACA
ATTGAAGAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATACTTTC
AGAAAACAGCACCCTAATGCTGTCGGCTATACCTTCTGGGGTGAAAATCAGCGCATAACC
AACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTACCGACAAGGTTCAT
GATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTG
AAGCTATAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTACATAA
TCACTTGACAAATGCTTATATAAATCTTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAG
AGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCTGTCAGTCTGTCAGG
TGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAA
ACTTTCATAGGCATTTTATCATGAAATATGATTCC