Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0801000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:33919497:33924589:1 gene:Os01g0801000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18). (Os01t0801000-01)
Sequence

ATGCCGCTGCTCCTGCGCGGCGGCTCCCTCTTCCGTCTCTACGGGTGTGGCTGTGGGCTT
CCAAGCGCAAATTTCAGTCCCAGCAAACTAGCACTGATAAGACTAAGCTTGATGATGGCA
GAAACACGAGCCACCTATTCGCGTCGAGCTGCCTCTAAGAATACTGATATCAAGAAAGAT
GATGAACATGTCCTTGAAAAGGAGGATGTTGCTGAAAGCAAATTGGAGATAGAGCAACTT
AGGAATGACCCCGATCGACTCCAATCCATGACAGTGAAGGAGCTCAGGGAAATCACGAGG
ATGATGGGAATTCCTGTAAAAGGCAACAAGAAAGATTTGGTATCAGCCCTGATGGATTCT
CTGGGTAAAGTGGGAACTTCATCAGTTGAGAAGATTGGTGTGTCTGAAGTACCTTCAAAA
AGAAAAGGTGCTTCAGTAGTAGTTGAACAAAACATAGATAGTTCTGAGGTCATTTCTGAA
ACTCCTAGTAAGAGAAGTAGAGCAAAGAACAAAGGAACCGCTGAGGAGAGTTCTGGGGCT
AATGTCAAGCAAAGCAAGACATCAGTCCAGAAGAAAAAGCTAGTTGTCCAAGGTGCCAGT
GTGGACCATGAAGAACCTTGGACTGTACTTGTACACAAGAAACCACAACCTGCCTGGATT
CCTTATAATCCTAAGGTCATGAGGTCTCCATCTCTTAGCAAGGATACGAAGGCTCTAAAG
ATTCTGTCATGGAATGTGAATGGATTAAAAGCTTTACTTAAATCGAGGGGCTTCTCTATT
CATCAGTTAGCTCAGAGGGAGGACTTCGATATACTATGCCTACAAGAGACAAAAATGCAG
GAGAAGGATGTAGAAGTCATTAAGGAAGGTCTACTTGAAGGCTATACCCATAGTTTCTGG
ACATGCAGTGTATCAAAGCTTGGCTATTCGGGGACTGCAATAATTTCAAGGGTGAAACCA
CTCTCTATCAAGTACGGGCTTGGTGTGCCAGACCATGATACTGAAGGGAGGGTCGTCACA
GTGGAGTTCAATGATTTTTACCTCCTGACTGCTTATGTACCAAATTCTGGTGATGGTCTA
AAAAGATTGACTTACAGGGTCACAGAATGGGATCCAAGCCTTGGTAACTACATGAAAGAC
TTGGAAAAATCGAAGCCTGTTATACTAACTGGTGATCTTAACTGTGCCCATCAAGAGATT
GATATACATGATCCTGCTGGAAATCGTAGAAGTGCAGGCTTTACAATTGAAGAAAGGGAA
TCATTCGAGACTAATTTTTTGTCCAAAGGTTTTGTTGATACATTTCGAAAACAGCATCCC
AATGTTGTTGGATATAGTTACTGGGGTTATAGGCATAATGCCCGGAAGACCAACAAAGGT
TGGCGTCTGGATTATTTTCTTGTGTCTGAATCCATTGCAGAAAGAGTCCATGATTCATAC
ATTATTCCAGACATATCTGCCAGTGATCACAGCCCGCTAGGCCTCGTACTGAAGCTCTAG

Peptide Sequence

PEP ID

Os01t0801000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:33919497:33924589:1 gene:Os01g0801000 transcript:Os01t0801000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18). (Os01t0801000-01)
Sequence

MPLLLRGGSLFRLYGCGCGLPSANFSPSKLALIRLSLMMAETRATYSRRAASKNTDIKKD
DEHVLEKEDVAESKLEIEQLRNDPDRLQSMTVKELREITRMMGIPVKGNKKDLVSALMDS
LGKVGTSSVEKIGVSEVPSKRKGASVVVEQNIDSSEVISETPSKRSRAKNKGTAEESSGA
NVKQSKTSVQKKKLVVQGASVDHEEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALK
ILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFW
TCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGDGL
KRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERE
SFETNFLSKGFVDTFRKQHPNVVGYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHDSY
IIPDISASDHSPLGLVLKL

Transcript Sequence

Transcript ID

Os01t0801000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:33919497:33924589:1 gene:Os01g0801000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18). (Os01t0801000-01)
Sequence

GCCCTAGCTCGCCCGCCCATGCCGCTGCTCCTGCGCGGCGGCTCCCTCTTCCGTCTCTAC
GGGTGTGGCTGTGGGCTTCCAAGCGCAAATTTCAGTCCCAGCAAACTAGCACTGATAAGA
CTAAGCTTGATGATGGCAGAAACACGAGCCACCTATTCGCGTCGAGCTGCCTCTAAGAAT
ACTGATATCAAGAAAGATGATGAACATGTCCTTGAAAAGGAGGATGTTGCTGAAAGCAAA
TTGGAGATAGAGCAACTTAGGAATGACCCCGATCGACTCCAATCCATGACAGTGAAGGAG
CTCAGGGAAATCACGAGGATGATGGGAATTCCTGTAAAAGGCAACAAGAAAGATTTGGTA
TCAGCCCTGATGGATTCTCTGGGTAAAGTGGGAACTTCATCAGTTGAGAAGATTGGTGTG
TCTGAAGTACCTTCAAAAAGAAAAGGTGCTTCAGTAGTAGTTGAACAAAACATAGATAGT
TCTGAGGTCATTTCTGAAACTCCTAGTAAGAGAAGTAGAGCAAAGAACAAAGGAACCGCT
GAGGAGAGTTCTGGGGCTAATGTCAAGCAAAGCAAGACATCAGTCCAGAAGAAAAAGCTA
GTTGTCCAAGGTGCCAGTGTGGACCATGAAGAACCTTGGACTGTACTTGTACACAAGAAA
CCACAACCTGCCTGGATTCCTTATAATCCTAAGGTCATGAGGTCTCCATCTCTTAGCAAG
GATACGAAGGCTCTAAAGATTCTGTCATGGAATGTGAATGGATTAAAAGCTTTACTTAAA
TCGAGGGGCTTCTCTATTCATCAGTTAGCTCAGAGGGAGGACTTCGATATACTATGCCTA
CAAGAGACAAAAATGCAGGAGAAGGATGTAGAAGTCATTAAGGAAGGTCTACTTGAAGGC
TATACCCATAGTTTCTGGACATGCAGTGTATCAAAGCTTGGCTATTCGGGGACTGCAATA
ATTTCAAGGGTGAAACCACTCTCTATCAAGTACGGGCTTGGTGTGCCAGACCATGATACT
GAAGGGAGGGTCGTCACAGTGGAGTTCAATGATTTTTACCTCCTGACTGCTTATGTACCA
AATTCTGGTGATGGTCTAAAAAGATTGACTTACAGGGTCACAGAATGGGATCCAAGCCTT
GGTAACTACATGAAAGACTTGGAAAAATCGAAGCCTGTTATACTAACTGGTGATCTTAAC
TGTGCCCATCAAGAGATTGATATACATGATCCTGCTGGAAATCGTAGAAGTGCAGGCTTT
ACAATTGAAGAAAGGGAATCATTCGAGACTAATTTTTTGTCCAAAGGTTTTGTTGATACA
TTTCGAAAACAGCATCCCAATGTTGTTGGATATAGTTACTGGGGTTATAGGCATAATGCC
CGGAAGACCAACAAAGGTTGGCGTCTGGATTATTTTCTTGTGTCTGAATCCATTGCAGAA
AGAGTCCATGATTCATACATTATTCCAGACATATCTGCCAGTGATCACAGCCCGCTAGGC
CTCGTACTGAAGCTCTAGGCAGGCTGCATGCCTGGAACCCAATACGGACTTCTGGGTTTA
GTTAACAATGTTTTCCTGCTGTGAGTCTGTGGGAGGGTATGTGGTTTTGTATCAGTAGGT
TCTAATACTAGCCTAACGGATGTGGATGTGTTACACCAATCCGATGTTGGAAAAAAGGCT
GGTTTCGATATGTAGCCGAATGAGTCTGGGTGATGTAGTGTTGTTACACTTCCTTAAGCT
GCATTGACAGATCGTAATGCGGGGTCTGCACTTTTCACGTTTTCAGTGGAGTAGCTCAGT
ATTGGAATTCGATGGTAATATCATGATTCGTAG