Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0800400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:33893760:33895996:1 gene:Os01g0800400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0800400-01)
Sequence

ATGTCCCATCTCCAGCACCTCGCCGCCGGCGAACTCGTCACCGCACTCCGCGGAGCCTCC
TGCCCTTCATCAGCCCTCCGTCTCTACTCCCTCATCCGCATCCACGCCCGCCCCTCCGAT
CCCGCCCTTTTCGCCTGGCGCCCCGCCGTCCTCGCGCTCAAGCCCCTCTCGGCAGCCGCC
TCCCTCCCTCTCCTCTCCCACTTCCACGCCCACCTCATCAGGTCCAACCTCCTCGCCTAC
CCTCACGTCGCCTCCTCCCTCCTACGCGGTTACTCACTCCTCTCACCCGAACACGCCCAC
CACCTGTTCGATCAAATACCACCCTCCACCTGCAACCTGGTCGTCGTCAACGTCATGCTC
GGGTCCCTCTGCCGATCCTCCGATCTAGCTTCCGCGCGAGCCTTCTTTGATGGCATCCCT
GACAAGGACGTGGTTTCTTGGTCAACCATGCTTGCCTGTTATTTCTCCCACAGTCGCGTA
GCCGAAGGCCTTGCTTTCTTCCGCACAATGACATTTACCACTCAGCTTGCTGCAGATTAT
GTGATGCTCGTCACCGTTCTCACGGGTTGTGCATCAGCTGGCTTGCTGCCAGTGTCCTGC
AGGGCCATTCATGGATATATTGTCCGGCGCGGAATCACCTTCACCATGCACCTTGGCACG
GCTTTGATTGATTGCTATGCCAAGGCTGGCCGCCTTGATTATGCATCCCGTGTGTTTTGC
CGAGTCCCTTTGAGGAATGTGATGCACTGGACCGCAATGATTTGTGGGTCGGCAGCGCAT
CTTGGCAGCGAAAAGGCCATCCAGCTGTTTGAGGAGATGTGTCGGAGTGGAGTGCAACCA
AATGAGATGACATTCACAGCTGTTCTCAGTGCATGCGGGCAAGCTGGACTGGTGGATCAA
GGGAGGAGGTTCTTTAAACTTATGGTTGACACATATGGCTTTGAGCCGACTATACATCAC
TATGGCTGCATTGTTGATCTCTATGCAAAGGCTGGGAAACTGGAGGATGCTTATGAGGTT
ATCAAGACCATGAGAATGGAGCCAAATATCATCATTTGGACTTCATTGTTAGCAGCATGC
AAGAAGTTCAAAAATTTTTACATTGCAGTGGAGGGAATAGAGAAAGTCTTGTCAATGGAG
ATATCAGAAGAAAATGGTGGATTATATGCACTGATTTCTGACCTTTATGCTATGGGTGGA
CAGTGGGAAGATGTGCTAAGGGTTAGGAGTTTGATGGAGGAACGTAATGTGTGGAAGATC
AGAGGGTCAAGCTCCATCAAGGTGGGCGAACCCCAGGACTTTACTTTTCCTGCAGTCAGT
TGA

Peptide Sequence

PEP ID

Os01t0800400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:33893760:33895996:1 gene:Os01g0800400 transcript:Os01t0800400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0800400-01)
Sequence

MSHLQHLAAGELVTALRGASCPSSALRLYSLIRIHARPSDPALFAWRPAVLALKPLSAAA
SLPLLSHFHAHLIRSNLLAYPHVASSLLRGYSLLSPEHAHHLFDQIPPSTCNLVVVNVML
GSLCRSSDLASARAFFDGIPDKDVVSWSTMLACYFSHSRVAEGLAFFRTMTFTTQLAADY
VMLVTVLTGCASAGLLPVSCRAIHGYIVRRGITFTMHLGTALIDCYAKAGRLDYASRVFC
RVPLRNVMHWTAMICGSAAHLGSEKAIQLFEEMCRSGVQPNEMTFTAVLSACGQAGLVDQ
GRRFFKLMVDTYGFEPTIHHYGCIVDLYAKAGKLEDAYEVIKTMRMEPNIIIWTSLLAAC
KKFKNFYIAVEGIEKVLSMEISEENGGLYALISDLYAMGGQWEDVLRVRSLMEERNVWKI
RGSSSIKVGEPQDFTFPAVS

Transcript Sequence

Transcript ID

Os01t0800400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:33893760:33895996:1 gene:Os01g0800400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0800400-01)
Sequence

AAATTCCAAACCGAGCTCACCAGCGCCGGCGCCGGCGCCGGCACCGCGGCACGCCGTGCC
CTTGCTCCCCAATGTCCCATCTCCAGCACCTCGCCGCCGGCGAACTCGTCACCGCACTCC
GCGGAGCCTCCTGCCCTTCATCAGCCCTCCGTCTCTACTCCCTCATCCGCATCCACGCCC
GCCCCTCCGATCCCGCCCTTTTCGCCTGGCGCCCCGCCGTCCTCGCGCTCAAGCCCCTCT
CGGCAGCCGCCTCCCTCCCTCTCCTCTCCCACTTCCACGCCCACCTCATCAGGTCCAACC
TCCTCGCCTACCCTCACGTCGCCTCCTCCCTCCTACGCGGTTACTCACTCCTCTCACCCG
AACACGCCCACCACCTGTTCGATCAAATACCACCCTCCACCTGCAACCTGGTCGTCGTCA
ACGTCATGCTCGGGTCCCTCTGCCGATCCTCCGATCTAGCTTCCGCGCGAGCCTTCTTTG
ATGGCATCCCTGACAAGGACGTGGTTTCTTGGTCAACCATGCTTGCCTGTTATTTCTCCC
ACAGTCGCGTAGCCGAAGGCCTTGCTTTCTTCCGCACAATGACATTTACCACTCAGCTTG
CTGCAGATTATGTGATGCTCGTCACCGTTCTCACGGGTTGTGCATCAGCTGGCTTGCTGC
CAGTGTCCTGCAGGGCCATTCATGGATATATTGTCCGGCGCGGAATCACCTTCACCATGC
ACCTTGGCACGGCTTTGATTGATTGCTATGCCAAGGCTGGCCGCCTTGATTATGCATCCC
GTGTGTTTTGCCGAGTCCCTTTGAGGAATGTGATGCACTGGACCGCAATGATTTGTGGGT
CGGCAGCGCATCTTGGCAGCGAAAAGGCCATCCAGCTGTTTGAGGAGATGTGTCGGAGTG
GAGTGCAACCAAATGAGATGACATTCACAGCTGTTCTCAGTGCATGCGGGCAAGCTGGAC
TGGTGGATCAAGGGAGGAGGTTCTTTAAACTTATGGTTGACACATATGGCTTTGAGCCGA
CTATACATCACTATGGCTGCATTGTTGATCTCTATGCAAAGGCTGGGAAACTGGAGGATG
CTTATGAGGTTATCAAGACCATGAGAATGGAGCCAAATATCATCATTTGGACTTCATTGT
TAGCAGCATGCAAGAAGTTCAAAAATTTTTACATTGCAGTGGAGGGAATAGAGAAAGTCT
TGTCAATGGAGATATCAGAAGAAAATGGTGGATTATATGCACTGATTTCTGACCTTTATG
CTATGGGTGGACAGTGGGAAGATGTGCTAAGGGTTAGGAGTTTGATGGAGGAACGTAATG
TGTGGAAGATCAGAGGGTCAAGCTCCATCAAGGTGGGCGAACCCCAGGACTTTACTTTTC
CTGCAGTCAGTTGATTTTTCATATGGTTTCCACAACCTGGAAGTTTTGGGACAGAATGGA
AGGACACAGCCTCTTTTGATTGGCTTCACTGCTGAAGTATTCAGAGGATAACTTTACATG
CTACTTGGTGAAATCTGTTTGGGGGCATCAGTGGAATGAATACAAGTTTTTACCCGATCT
TTTTTCACTGCTGCGTTGAGTATTTGAGATAATCGATGATATTTGGATATGGTTGATCAG
GATGATAAACTGGCATATTAGAAGATCATCTGTTTGATGCATGGAGATTACTCAGGTGCA
TATGAATATATGATCAATTGATGCTTCAAACAAACTAATGAGGGATAACAAAGGATATCT
CTGAGTAATGGTTTTCATGACTTCTTCCTAGCTGATTTGGCTTTCCAGACACAACCGAAG
ACAGCTCAACAATTGAGTTTCAGCTCCTTACTTTCATTAAAACTCTACAGTTGATCAATT
ATCCAGTCTGTTTTGTCGCTAACAGTTTACAAGTCCTGCATCTTCAATAAATTCTGCAAG
CTTGTATCCAGGTGACATTTTTCGTAGATTGCAGTTTTTACATGTTATACGGCAAAAAAA
AATATTCCTGTTGTGCTCATTGGAAATTCTTTTAGGATCAATGTCCTGGAGTTGCTGTAC
ATTGCTATATCACTTGTATTTGAGTGGATAAACTGTTGGCTAATGTAAAAAAAAAAGCCT
TCTGTGAAAACAAATTGATGG