Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0796700-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:33740652:33745858:-1 gene:Os01g0796700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0796700-01)
Sequence

ATGCCCGCGCAGAAGCGCCGGCTCTCGTCGTCGCCGTCTTCGAGGCCCCGCGACCACGTG
GAGACTAACGGGATGACTGGTGCTTCGAAGGCCGCCGCCGGCAGCGGCGGCGGAGGAGGA
GGAGGAAGCGGAGGGGGAGTTCCGCTGCCGCCGAGGGGAGGTTCCGCCGCCGCCGCCGCC
GCCAAGCGGGCGGCTGACCCGCAGCCTCAGCGCGAAGGCGATTCGGACGCGGAGTTCGGC
GGCGGCGTGGACGGCGACAGCGAGTCGTCGCAGAGCGACGGCGACATGGACGAGTTCATA
ATAGTGAAATTAGCAGAAATACGAAAGGAGGTCCAATGCCCTATCTGTTTAGGGATTATC
CGGAAAACAAGAACTGTTATGGAGTGTTTACATCGGTTTTGCAGGGATTGCATAGATAAA
TCTATGCGGCTAGGAAATAATGAATGCCCAGCATGCCGCACTCACTGTGCAAGTAGACGT
TCTTTGAGGGATGATCCTAATTATGATGCATTGATTGCTGCCCTATATCCAGATATTGAT
AAATACGAAGAAGAGGAACTTGCTTTCAGTGAAGAGGAGAGGAGTCGGAACAAAAAGATC
CAAGCAACAATTGAGGAAACAATTCGAAGACAGTCAGAGGCAGTTGGTAAAAAGCGTTCC
ACAGCCAAAGCAACTGCCACTGTTTTTGCAAGGAAGTACAGGAGAAATATGCGAACGCGT
GGTAGAGGTAAAACCATTGCTCCTGATATCGCCCCTACTGGCTCAGACAACGAGGATAGA
GAAGAAGGAAATGCCATTGATACCACCAAGGAGTCATCTTCTGCTGATGACCGCTCTTCA
GATTTAATGCCAAAAAGAGGTAGGAAAAGGCCCGCATCACGAGCATCTCCTGCTAGGACC
ATTGGCAGCAGTGACCATGTCTTTGAGGAGAACGATGAGCTGATAGGCGGAAAAGAAAGT
TTCACCACGTCTCCATTGCGGGGGGAGATGCTTGCATGGGGCAAAAATGGAACACGAAGC
CAAACAAGACATGGCAGTGTTGGTGGTTCAAATGGCAGAATGGCAAAGGGTGGACGCGTT
GCAAAGTTGGTGGACCACCTCCGTACTACTGATGATATGGATAAGGAGTTCAACTTGTAT
CTTGTTCTCCTTCCTCTTGATGAACAAAGTATGCCTAACTTGGATAAGCCCTATATAAGT
TGTCGACCAACCTTGTCCATTCGGCATCTTGTACAGTTCATTGCTCTGCAGTTGTCTCGG
CAAGTTGAAGAACTTGATATCTTTATGAGGATAGACCACTGCAATGGAAGTGTTACAACA
CAGGACTGCACTACAGGTGTTGCAAAAATGCGTTTATCTGATGGCCTGGAAAGAATAAGG
GAGGATAAACTTCTTTCAGAGCTTCATCCTTCTTTTACTTCTCATCACGGTGATCTGGAA
TTGCTGTATGCTTTGAAAACTCAAGGCTAG

Peptide Sequence

PEP ID

Os01t0796700-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:33740652:33745858:-1 gene:Os01g0796700 transcript:Os01t0796700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0796700-01)
Sequence

MPAQKRRLSSSPSSRPRDHVETNGMTGASKAAAGSGGGGGGGSGGGVPLPPRGGSAAAAA
AKRAADPQPQREGDSDAEFGGGVDGDSESSQSDGDMDEFIIVKLAEIRKEVQCPICLGII
RKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDID
KYEEEELAFSEEERSRNKKIQATIEETIRRQSEAVGKKRSTAKATATVFARKYRRNMRTR
GRGKTIAPDIAPTGSDNEDREEGNAIDTTKESSSADDRSSDLMPKRGRKRPASRASPART
IGSSDHVFEENDELIGGKESFTTSPLRGEMLAWGKNGTRSQTRHGSVGGSNGRMAKGGRV
AKLVDHLRTTDDMDKEFNLYLVLLPLDEQSMPNLDKPYISCRPTLSIRHLVQFIALQLSR
QVEELDIFMRIDHCNGSVTTQDCTTGVAKMRLSDGLERIREDKLLSELHPSFTSHHGDLE
LLYALKTQG

Transcript Sequence

Transcript ID

Os01t0796700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:33740652:33745858:-1 gene:Os01g0796700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0796700-01)
Sequence

ATTTTCCTCTCTCTATCTCTCCGTCAGGCAAGGCTCCCTCACGCACCCACCTGGCTGGTC
ACCTCCCTTCTTCCGCTGCCCTCCTCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCCG
ACGACTGCCCCCGCCCCCTCCCGGCCTCGTCGCGAGGGTGGATAGCCGCCACCGCCGCCA
GATCCTACGGGCAGAGGGCCAGAATGCCCGCGCAGAAGCGCCGGCTCTCGTCGTCGCCGT
CTTCGAGGCCCCGCGACCACGTGGAGACTAACGGGATGACTGGTGCTTCGAAGGCCGCCG
CCGGCAGCGGCGGCGGAGGAGGAGGAGGAAGCGGAGGGGGAGTTCCGCTGCCGCCGAGGG
GAGGTTCCGCCGCCGCCGCCGCCGCCAAGCGGGCGGCTGACCCGCAGCCTCAGCGCGAAG
GCGATTCGGACGCGGAGTTCGGCGGCGGCGTGGACGGCGACAGCGAGTCGTCGCAGAGCG
ACGGCGACATGGACGAGTTCATAATAGTGAAATTAGCAGAAATACGAAAGGAGGTCCAAT
GCCCTATCTGTTTAGGGATTATCCGGAAAACAAGAACTGTTATGGAGTGTTTACATCGGT
TTTGCAGGGATTGCATAGATAAATCTATGCGGCTAGGAAATAATGAATGCCCAGCATGCC
GCACTCACTGTGCAAGTAGACGTTCTTTGAGGGATGATCCTAATTATGATGCATTGATTG
CTGCCCTATATCCAGATATTGATAAATACGAAGAAGAGGAACTTGCTTTCAGTGAAGAGG
AGAGGAGTCGGAACAAAAAGATCCAAGCAACAATTGAGGAAACAATTCGAAGACAGTCAG
AGGCAGTTGGTAAAAAGCGTTCCACAGCCAAAGCAACTGCCACTGTTTTTGCAAGGAAGT
ACAGGAGAAATATGCGAACGCGTGGTAGAGGTAAAACCATTGCTCCTGATATCGCCCCTA
CTGGCTCAGACAACGAGGATAGAGAAGAAGGAAATGCCATTGATACCACCAAGGAGTCAT
CTTCTGCTGATGACCGCTCTTCAGATTTAATGCCAAAAAGAGGTAGGAAAAGGCCCGCAT
CACGAGCATCTCCTGCTAGGACCATTGGCAGCAGTGACCATGTCTTTGAGGAGAACGATG
AGCTGATAGGCGGAAAAGAAAGTTTCACCACGTCTCCATTGCGGGGGGAGATGCTTGCAT
GGGGCAAAAATGGAACACGAAGCCAAACAAGACATGGCAGTGTTGGTGGTTCAAATGGCA
GAATGGCAAAGGGTGGACGCGTTGCAAAGTTGGTGGACCACCTCCGTACTACTGATGATA
TGGATAAGGAGTTCAACTTGTATCTTGTTCTCCTTCCTCTTGATGAACAAAGTATGCCTA
ACTTGGATAAGCCCTATATAAGTTGTCGACCAACCTTGTCCATTCGGCATCTTGTACAGT
TCATTGCTCTGCAGTTGTCTCGGCAAGTTGAAGAACTTGATATCTTTATGAGGATAGACC
ACTGCAATGGAAGTGTTACAACACAGGACTGCACTACAGGTGTTGCAAAAATGCGTTTAT
CTGATGGCCTGGAAAGAATAAGGGAGGATAAACTTCTTTCAGAGCTTCATCCTTCTTTTA
CTTCTCATCACGGTGATCTGGAATTGCTGTATGCTTTGAAAACTCAAGGCTAGATCAGAA
TTTCTTGACACCGCATTCGTCACTGTCGTTACAGAGGTACATCTGGCCATTCGGGCTCAG
TCTGGTGAAAGGTTGTATATAAAAAGCATTCTAGTGGTTCTCTTTCTTTTTTCGTGATGT
TTAAAATATAATTCGATTACTTTGTAATATATAGATTTTCATTGTTTGCAAGGATCAGTT
GAATTTATTAGCGATTTTTATAAATAGACTAAGTAAATATCCTTCTGTTTATTCATTTGT
ACCAGTTTGCTGGATCATGGATAGTAGTAGATTGTTGCGGTAAAATCTATTTGTTATTCG
CTTGTTCAGGCCTTCGT