Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0794400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:33642080:33650929:1 gene:Os01g0794400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thioredoxin domain 2 containing protein. (Os01t0794400-01)
Sequence

ATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGGCTCTGTG
CTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCAGATTTCTGAGCTAGAG
GGCAAGATCATAGGGCTGTACTTCGCTGCAAACTGGTACCCCAAGTGCGAGGCCTTCACC
CCCGCGCTGACCGCCGCCTACCACCAGCTCAAGGAGCACGGCGCCGGCTTCGAGGTCATC
TTCGTGTCGTGCGACGAGAATCGACCGTCCTTCGAGAGGTTCCACCGCGCCATGCCGTGG
CCCGCCGTGCCCTTCGGCGACATCGGGTGCAAGAAGCGCCTCAGCGAGAGGTTCCAGGTC
GAGGGCATCCCGCGCCTGGTGGTGCTCGCCCCGAACGGCGAGGTCGTGCAGCCTGATGCC
GTCGAGCTCGTGCACCGCTACGGCGATCGGGCATTCCCCTTCACGTCGGCGAGGGTGGCG
GAGCTGGAGGCCGACGAGCAGCGCAAGTTCGCGTCTCAGACGCTGGAGAAGATCTTCTCC
GTCAGCGGGAAAGACTACGTGAACGGTAGCCAAGAACAGGTTCCCATCTCGAGCCTAGTC
GGGAAGACGGTAGGGCTCTACTTCTCGGCGCACCGGTGTGCGCCGTGCATCAAGTTCACC
GCGAAGCTGGCCGCCATATACAGCAACCTGAAGGGCAAGGCCGAGGACTTTGAGATAATC
TACATCCCCATGGACAAGGAGGAGGACGGGTACCTGCGGTCGTGCAGCGACATGCCGTGG
CTGGCGCTGCCGTACGACGACGGCGCGTCGTCGGGGGCGCTGGCCAGGTACTTCGACGTC
CGGGAGATCCCGACGCTGGTGGTGGTTGGGCCCGACGGCAAGACGGTGACGAGGGAGGGG
AGGAACCTGGTGAACCTCTACTTCGACATGGCGTTCCCGTTCACCGACGAGCAGATCAGG
CTGCTGCAGGAGATGGAGGACGAGGATGCCAAGGGGTACCCGCCGTCGCTGCGCCACACC
GGCCACCGCCACGAGCTAAGCATCGTGTCTGACAAGTCGGGAGGAGGGCCGTACATCTGC
TGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGGCTACGAG
ATACACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAG

Peptide Sequence

PEP ID

Os01t0794400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:33642080:33650929:1 gene:Os01g0794400 transcript:Os01t0794400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thioredoxin domain 2 containing protein. (Os01t0794400-01)
Sequence

MGREPEMEEARENGGVGGSVLPLASLISPTGNEVQISELEGKIIGLYFAANWYPKCEAFT
PALTAAYHQLKEHGAGFEVIFVSCDENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQV
EGIPRLVVLAPNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADEQRKFASQTLEKIFS
VSGKDYVNGSQEQVPISSLVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEII
YIPMDKEEDGYLRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREG
RNLVNLYFDMAFPFTDEQIRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYIC
CECDEQGLGWAYQCIACGYEIHLRCGRDMEGRAE

Transcript Sequence

Transcript ID

Os01t0794400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:33642080:33650929:1 gene:Os01g0794400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thioredoxin domain 2 containing protein. (Os01t0794400-01)
Sequence

AGTGGACATGGGACGGGAGCCGGAGATGGAGGAAGCACGGGAGAATGGGGGCGTCGGCGG
CTCTGTGCTGCCTCTGGCCTCGCTCATCTCTCCAACTGGGAACGAGGTGCAGATTTCTGA
GCTAGAGGGCAAGATCATAGGGCTGTACTTCGCTGCAAACTGGTACCCCAAGTGCGAGGC
CTTCACCCCCGCGCTGACCGCCGCCTACCACCAGCTCAAGGAGCACGGCGCCGGCTTCGA
GGTCATCTTCGTGTCGTGCGACGAGAATCGACCGTCCTTCGAGAGGTTCCACCGCGCCAT
GCCGTGGCCCGCCGTGCCCTTCGGCGACATCGGGTGCAAGAAGCGCCTCAGCGAGAGGTT
CCAGGTCGAGGGCATCCCGCGCCTGGTGGTGCTCGCCCCGAACGGCGAGGTCGTGCAGCC
TGATGCCGTCGAGCTCGTGCACCGCTACGGCGATCGGGCATTCCCCTTCACGTCGGCGAG
GGTGGCGGAGCTGGAGGCCGACGAGCAGCGCAAGTTCGCGTCTCAGACGCTGGAGAAGAT
CTTCTCCGTCAGCGGGAAAGACTACGTGAACGGTAGCCAAGAACAGGTTCCCATCTCGAG
CCTAGTCGGGAAGACGGTAGGGCTCTACTTCTCGGCGCACCGGTGTGCGCCGTGCATCAA
GTTCACCGCGAAGCTGGCCGCCATATACAGCAACCTGAAGGGCAAGGCCGAGGACTTTGA
GATAATCTACATCCCCATGGACAAGGAGGAGGACGGGTACCTGCGGTCGTGCAGCGACAT
GCCGTGGCTGGCGCTGCCGTACGACGACGGCGCGTCGTCGGGGGCGCTGGCCAGGTACTT
CGACGTCCGGGAGATCCCGACGCTGGTGGTGGTTGGGCCCGACGGCAAGACGGTGACGAG
GGAGGGGAGGAACCTGGTGAACCTCTACTTCGACATGGCGTTCCCGTTCACCGACGAGCA
GATCAGGCTGCTGCAGGAGATGGAGGACGAGGATGCCAAGGGGTACCCGCCGTCGCTGCG
CCACACCGGCCACCGCCACGAGCTAAGCATCGTGTCTGACAAGTCGGGAGGAGGGCCGTA
CATCTGCTGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGG
CTACGAGATACACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAGGAGCATAG
GGCCCTCCAACTCGTAGTATATTGAACTGAACGTGGTGTGGTGTGGTGTGTGTCTATTGA
TCTGAACAAAGCTTGGGTTGCTCTTGCCAAGCCTGATGGCAGAATAGATGAGGATAACAC
AAGTGGTTTCTGTACTTCTGTTATGTGTTCCTTGGCTGCAAAAGTGATGCAGTTCAGGGT
GTTGAATAAACGTGATAATGCTGGATACGAACG