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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0788950-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:33482291:33484203:-1 gene:Os01g0788950 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to partner of Nob1. (Os01t0788950-01)
Sequence

ATGGAGGTCGACAGGGCCGCGAGCGCCGCCGCTGCGGGGGAGTCCTCCTCCGCCGGCGCG
ATGGCGGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGG
CCCCAGTTCCGGAAGGTGCCGGTGCCGCAGCACCGCTTCGCTCCGCTGAAGAAGGCGTGG
ATGGACATCTACACGCCCGTCTACGAGCACATGAAGATCGACATACGCATGAACCTGAAG
GCAAGAAGGGTGGAGCTAAAAACAAGGCAAGACACACCAGATGTGAGCAATCTTCAGAAG
TGTGCAGACTTCGTGCATGCTTTTATGCTTGGATTTGACATCGCAGATGCCGTTGCATTG
CTCCGCCTTGATGACTTGTATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTCCGG
GGTGAGCATCTGTCACGTGCTATTGGCCGTTTGTCAGGGAAAGGAGGCAAGACCAAATAC
GCCATTGAGAATTCTACCAGGACTCGCATAGTTATTGCTGACACAAAGATCCACATACTT
GGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTCATCTTAGGTTCT
CCTGCTGGCAAAGTGTATTCAAAGCTAAGGGCCGTTTCTGCCAGGTTGGCTGAAAGGTAT
TAA

Peptide Sequence

PEP ID

Os01t0788950-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:33482291:33484203:-1 gene:Os01g0788950 transcript:Os01t0788950-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to partner of Nob1. (Os01t0788950-01)
Sequence

MEVDRAASAAAAGESSSAGAMAVEKPRFEALMPSEMSGGRPQFRKVPVPQHRFAPLKKAW
MDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCADFVHAFMLGFDIADAVAL
LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL
GSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSARLAERY

Transcript Sequence

Transcript ID

Os01t0788950-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:33482291:33484203:-1 gene:Os01g0788950 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to partner of Nob1. (Os01t0788950-01)
Sequence

GCCGCCGCGACGAGATGGAGGTCGACAGGGCCGCGAGCGCCGCCGCTGCGGGGGAGTCCT
CCTCCGCCGGCGCGATGGCGGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGA
TGAGCGGCGGGAGGCCCCAGTTCCGGAAGGTGCCGGTGCCGCAGCACCGCTTCGCTCCGC
TGAAGAAGGCGTGGATGGACATCTACACGCCCGTCTACGAGCACATGAAGATCGACATAC
GCATGAACCTGAAGGCAAGAAGGGTGGAGCTAAAAACAAGGCAAGACACACCAGATGTGA
GCAATCTTCAGAAGTGTGCAGACTTCGTGCATGCTTTTATGCTTGGATTTGACATCGCAG
ATGCCGTTGCATTGCTCCGCCTTGATGACTTGTATGTGGATTCCTTCGAGATCAAGGATG
TGAAGACACTCCGGGGTGAGCATCTGTCACGTGCTATTGGCCGTTTGTCAGGGAAAGGAG
GCAAGACCAAATACGCCATTGAGAATTCTACCAGGACTCGCATAGTTATTGCTGACACAA
AGATCCACATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTC
TCATCTTAGGTTCTCCTGCTGGCAAAGTGTATTCAAAGCTAAGGGCCGTTTCTGCCAGGT
TGGCTGAAAGGTATTAAATGAGTTTTGGTCCAATCATATAGTTGCAGTTTTGATCTTATA
GTATGTTCTACTAGCTGATTTGTGTGAGTGGGCAACTTATTGTAATGTTCCGATGAATAA
CCAAATGTATGCTAGTAATAGATTTGTAATGATATGCCTTTTCTACCGCCTGTTTGAGGG
AATGGTAAGTCGTGCTATGATGTACTGCATGTAAAATGTTTACATCCAGCTGTGCCACTG
AAATGAATTCAGTGCCAGAAACCTGATAAGTTGCTTCCTAGAATTGTCACCCCGTTCCTT
CAGAATGCAAGAAATGTTGATATCGTC