Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0788400-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:33453435:33460079:1 gene:Os01g0788400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 6 description:Similar to Pectinesterase (EC 3.1.1.11) (Fragment). (Os01t0788400-01)
Sequence	ATGCGTCAGAGAGACGAGCCTCTCCTCTCTTCTCCCTCGCACAGAAACGCCTACCCATGC AAACTTCTATCGTTCACGCTGCTCTCTTTAGCCACCGTGCTCTGCCTCTGCGCGGGCGCC GCCTTCCTCCTACTCTCCCCGACGGCCACGAACCTCTGCGCGAGCTCCCCTGACCCGGCC TCGTGCCAAGCCATCGTCGCCGACGCCGTCCTAGCGTCCCCGCACTCCCACCCGAGCCGC CCGGCGCACGTCCTCCGCGCCATCCTTGCCACGTCTCTCGATCGGCATGACGCGGCCGCG GAAGCGGTGGCGGGCATGCGCCGGCGCGCCAGCGACCCGAGGCACCGCGCGGCCCTGGAG GACTGCGTCCAGCTGATGGGGCTCGCGCGCGACCGTCTCGCCGACGCGGCGGGCGCGCCC GACGTCGACGTCGACGTCGACGACGCGAGGACGTGGCTCAGCGCCGTGCTCACCGACCAC GTGACGTGCCTGGACGGCCTCGACGACGGGCCGCTGCGCGACTCCGTGGGGGCGCACCTG GAGCCGCTCAAGTCCCTCGCGAGCGCGTCGCTCGCCGTGCTCAGCGCCGCCGGCCGCGGC GCTCGGGACGTGCTCGCGGAGGCCGTGGACAGGTTCCCGTCGTGGCTGACGGCGAGAGAC CGCACGCTCCTCGACGCGGGCGCGGGCGCCGTGCAGGCGGACGTGGTGGTGGCCAAAGAC GGGAGCGGCAAGTACACGACGATAAAGGAGGCGGTGGACGCGGCCCCCGACGGCGGCAAG AGCCGGTACGTGATCTACGTGAAGAAGGGGGTGTACAAGGAGAACCTCGAGGTGGGGAAG ACGAAGCGGGTGCTGATGATCGTCGGCGACGGCATGGACCAGACGGTCATCACCGGCAGC CGCAACGTGGTCGACGGCTCCACAACTTTCAACTCCGCCACGCTAGCCTTGTCGGGCGAC GGGATCATCCTCCAGGACCTCAAGGTGGAGAACACGGCGGGCGCCGAGAAGCAGCAGGCG GTGGCCCTCCGCGTGAGCGCCGACCGCGCCGTGATCAACCGCTGCCGCCTGGACGGCTAC CAGGACACCCTGTACGCGCACCAGCTCCGCCAGTTCTACCGCGACTGCGCCGTCTCCGGC ACGGTGGACTTCGTGTTCGGCAACGCCGCGGCGGTGCTCCAGGGCTGCGTGCTCACGGCG CGGCGCCCCGCGCAGGCGCAGAAGAACGCGGTCACGGCGCAGGGCCGGACCGACCCGAAC CAGAACACCGGGACGTCCATCCACCGGTGCCGCGTCGTCCCGGCGCCCGACCTGGCGCCC GCCGCGAAGCAGTTCCCGACGTTCCTGGGCCGGCCGTGGAAGGAGTACTCGCGGACGGTG TACATGCTGTCCTACCTGGACTCGCACGTCGACCCGAGGGGTTGGCTCGAGTGGAACGGC GCCGACTTCGCGCTCAAGACGCTCTTCTACGGCGAGTACCAGAACCAGGGCCCCGGCGCC AGCACGGCCGGCCGCGTCAACTGGCCCGGGTACCACGTCATCACGGACCAGAGCGTCGCC ATGCAGTTCACCGTGGGGCAGTTCATCCAGGGCGGAAACTGGCTCAAGGCCACCGGCGTC AACTACAACGAGGGGCTCTGA

Peptide Sequence

PEP ID	Os01t0788400-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:33453435:33460079:1 gene:Os01g0788400 transcript:Os01t0788400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 6 description:Similar to Pectinesterase (EC 3.1.1.11) (Fragment). (Os01t0788400-01)
Sequence	MRQRDEPLLSSPSHRNAYPCKLLSFTLLSLATVLCLCAGAAFLLLSPTATNLCASSPDPA SCQAIVADAVLASPHSHPSRPAHVLRAILATSLDRHDAAAEAVAGMRRRASDPRHRAALE DCVQLMGLARDRLADAAGAPDVDVDVDDARTWLSAVLTDHVTCLDGLDDGPLRDSVGAHL EPLKSLASASLAVLSAAGRGARDVLAEAVDRFPSWLTARDRTLLDAGAGAVQADVVVAKD GSGKYTTIKEAVDAAPDGGKSRYVIYVKKGVYKENLEVGKTKRVLMIVGDGMDQTVITGS RNVVDGSTTFNSATLALSGDGIILQDLKVENTAGAEKQQAVALRVSADRAVINRCRLDGY QDTLYAHQLRQFYRDCAVSGTVDFVFGNAAAVLQGCVLTARRPAQAQKNAVTAQGRTDPN QNTGTSIHRCRVVPAPDLAPAAKQFPTFLGRPWKEYSRTVYMLSYLDSHVDPRGWLEWNG ADFALKTLFYGEYQNQGPGASTAGRVNWPGYHVITDQSVAMQFTVGQFIQGGNWLKATGV NYNEGL

Transcript Sequence

Transcript ID	Os01t0788400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:33453435:33460079:1 gene:Os01g0788400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 6 description:Similar to Pectinesterase (EC 3.1.1.11) (Fragment). (Os01t0788400-01)
Sequence	CACAGGTTGCAGCAGTAGTTGTAAACAGGTTCACTTGTCGCACAGGGATAGGACACCATG CGTCAGAGAGACGAGCCTCTCCTCTCTTCTCCCTCGCACAGAAACGCCTACCCATGCAAA CTTCTATCGTTCACGCTGCTCTCTTTAGCCACCGTGCTCTGCCTCTGCGCGGGCGCCGCC TTCCTCCTACTCTCCCCGACGGCCACGAACCTCTGCGCGAGCTCCCCTGACCCGGCCTCG TGCCAAGCCATCGTCGCCGACGCCGTCCTAGCGTCCCCGCACTCCCACCCGAGCCGCCCG GCGCACGTCCTCCGCGCCATCCTTGCCACGTCTCTCGATCGGCATGACGCGGCCGCGGAA GCGGTGGCGGGCATGCGCCGGCGCGCCAGCGACCCGAGGCACCGCGCGGCCCTGGAGGAC TGCGTCCAGCTGATGGGGCTCGCGCGCGACCGTCTCGCCGACGCGGCGGGCGCGCCCGAC GTCGACGTCGACGTCGACGACGCGAGGACGTGGCTCAGCGCCGTGCTCACCGACCACGTG ACGTGCCTGGACGGCCTCGACGACGGGCCGCTGCGCGACTCCGTGGGGGCGCACCTGGAG CCGCTCAAGTCCCTCGCGAGCGCGTCGCTCGCCGTGCTCAGCGCCGCCGGCCGCGGCGCT CGGGACGTGCTCGCGGAGGCCGTGGACAGGTTCCCGTCGTGGCTGACGGCGAGAGACCGC ACGCTCCTCGACGCGGGCGCGGGCGCCGTGCAGGCGGACGTGGTGGTGGCCAAAGACGGG AGCGGCAAGTACACGACGATAAAGGAGGCGGTGGACGCGGCCCCCGACGGCGGCAAGAGC CGGTACGTGATCTACGTGAAGAAGGGGGTGTACAAGGAGAACCTCGAGGTGGGGAAGACG AAGCGGGTGCTGATGATCGTCGGCGACGGCATGGACCAGACGGTCATCACCGGCAGCCGC AACGTGGTCGACGGCTCCACAACTTTCAACTCCGCCACGCTAGCCTTGTCGGGCGACGGG ATCATCCTCCAGGACCTCAAGGTGGAGAACACGGCGGGCGCCGAGAAGCAGCAGGCGGTG GCCCTCCGCGTGAGCGCCGACCGCGCCGTGATCAACCGCTGCCGCCTGGACGGCTACCAG GACACCCTGTACGCGCACCAGCTCCGCCAGTTCTACCGCGACTGCGCCGTCTCCGGCACG GTGGACTTCGTGTTCGGCAACGCCGCGGCGGTGCTCCAGGGCTGCGTGCTCACGGCGCGG CGCCCCGCGCAGGCGCAGAAGAACGCGGTCACGGCGCAGGGCCGGACCGACCCGAACCAG AACACCGGGACGTCCATCCACCGGTGCCGCGTCGTCCCGGCGCCCGACCTGGCGCCCGCC GCGAAGCAGTTCCCGACGTTCCTGGGCCGGCCGTGGAAGGAGTACTCGCGGACGGTGTAC ATGCTGTCCTACCTGGACTCGCACGTCGACCCGAGGGGTTGGCTCGAGTGGAACGGCGCC GACTTCGCGCTCAAGACGCTCTTCTACGGCGAGTACCAGAACCAGGGCCCCGGCGCCAGC ACGGCCGGCCGCGTCAACTGGCCCGGGTACCACGTCATCACGGACCAGAGCGTCGCCATG CAGTTCACCGTGGGGCAGTTCATCCAGGGCGGAAACTGGCTCAAGGCCACCGGCGTCAAC TACAACGAGGGGCTCTGATTAGAAGGGTAGAGATTATTGATCTGCCATCTTGTACGAGTT GCCATGTTCGCATGCACCCTGTTGGTTCCAATACGGAGTACTAATCATCGTCATCATCAG GAAATAAAAGCAATAAAGCATGCTAATGGCGCAGATCAGATCAATCTGATCGGAGGTGC