Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0785900-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:33329638:33331819:-1 gene:Os01g0785900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os01t0785900-01);Zinc finger, C2H2-type domain containing protein. (Os01t0785900-02)
Sequence

ATGGGCGAGAGGAGGCGCCGTGCCAGCGCTGTCGCCGGCGGCCGGGCTGAGGATGAGAAG
GCTGCTTCGGCGCCTGCGGCCGCGGCCCCGGCACCGACGGTGTGGTTCGCGCTGAAGAGG
TCGCTGCACTGCCGGTCCGAGCCGTCGGAGGTGCACGTGCCGAGGCCCAAGGCCGTCGCC
GCCGCCGCTGCGGGCGGTGGCGGGCACCTCTCGGCGATTGTGACCAAGCGCGCGGCGCCG
CGGTCGGGTTGCTCCCGGTCGATAGCCAACCTGCGGGACGTCATCCACGGGAGCAAGCGC
CACCCGGAGCGGCCGCCGAGCTGCAGCCCGAGGTCCATCGGCAGCAGCGAGTTCTTGAAC
CCCATCGCCCACGAGGTGGTGCTCAGCACCAACTCCCGCTGCGAGCTCAAGATCACCGGC
TTCGGTGGCTGCGGCGGCCTCGCGGCGGCGGCGGCGGCGGGGGGCGGCGTACTCGCGTCG
CCGCACGAGGCGGACGGCGACGGCGCCGTGGTGTCGTCGTTCGTTGGCACGCTCCGGCCG
GGCACCCCGGGGCCCGGCTGGAGCCACGGCCTGCAGTACAGCGGCTCGTGCCGGGGCAGC
ATGCGGTGCACGCCTCCGAGGTCGCCGAATGTGCTGCTGGACAGCAGGGACGCCGCCGCG
GCCGGGGTGACCGCTCACCGCGCGTCCTGCGAGGACGCCGTCAAGAGCTTTGGCAAGGGC
GGCGGCCTAAGCTGCCACCGTTGCGGTGAGCAGTTCAGCAAGTGGGAGGCACTGGAGGCG
CACCACCTTTCCAAGCATGCAGTGACGGAGCTGGTGGAAGGGGACTCGTCGAGGAAGATC
GTGGAGATCATCTGCCGGACGAGCCTGCTCAAGTCGGAGAGCAGCTGCGTGCGGATCGAG
CGTGTGTTCAAGGTGCACAACACGCAGCGGACGCTGGCGCGCTTCGAGGAGTACCGTGAG
GCGGTGAAGCTGAAGGCGAGCAAGCTGCCCAAGAAGCACCCGCGCTGCCTCGCCGACGGC
AACGAGCTGCTCCGATTCCACGGCGCCACGCTCTCCTGCGCGCTCGGCGGCGCGGCGGGC
TCCTCCAGCCTCTGCGCCTCCGACAAGTGCGCCGTCTGCCGCATCATCCGCCACGGATTC
TCCGCCAAGAAGGAAGGCAAGGCCGGCGTCGGCGTCTTCACCACGTCCACCAGCGGCCGC
GCCTACGAGTCCATCGAGGCCTCCGCCGGCGCCGTCGTCGGTGGCGACGACCCGGCGGCG
ACGCGCAAGGCGCTGCTGGTGTGCAGGGTCATCGCCGGCAGGGTGCACAAGCCGCTCGAG
AACCTCAAGGAGTTCGCCGGACAGACCGGCTTCGACTCGCTCGCCGGCAAGGTCGGGCCC
TACTCCAACATCGAGGAGCTCTACCTGCTGAACCCGAGGGCGCTGCTCCCGTGCTTCGTG
GTCATCTGCAAGGCTTAA

Peptide Sequence

PEP ID

Os01t0785900-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:33329638:33331819:-1 gene:Os01g0785900 transcript:Os01t0785900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os01t0785900-01);Zinc finger, C2H2-type domain containing protein. (Os01t0785900-02)
Sequence

MGERRRRASAVAGGRAEDEKAASAPAAAAPAPTVWFALKRSLHCRSEPSEVHVPRPKAVA
AAAAGGGGHLSAIVTKRAAPRSGCSRSIANLRDVIHGSKRHPERPPSCSPRSIGSSEFLN
PIAHEVVLSTNSRCELKITGFGGCGGLAAAAAAGGGVLASPHEADGDGAVVSSFVGTLRP
GTPGPGWSHGLQYSGSCRGSMRCTPPRSPNVLLDSRDAAAAGVTAHRASCEDAVKSFGKG
GGLSCHRCGEQFSKWEALEAHHLSKHAVTELVEGDSSRKIVEIICRTSLLKSESSCVRIE
RVFKVHNTQRTLARFEEYREAVKLKASKLPKKHPRCLADGNELLRFHGATLSCALGGAAG
SSSLCASDKCAVCRIIRHGFSAKKEGKAGVGVFTTSTSGRAYESIEASAGAVVGGDDPAA
TRKALLVCRVIAGRVHKPLENLKEFAGQTGFDSLAGKVGPYSNIEELYLLNPRALLPCFV
VICKA

Transcript Sequence

Transcript ID

Os01t0785900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:33329638:33331819:-1 gene:Os01g0785900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os01t0785900-01);Zinc finger, C2H2-type domain containing protein. (Os01t0785900-02)
Sequence

GACGCAGTCGTCACGGGCGCGGCAGATAGCTGGCTAGTGGCTAGCACCGCGCGTCGAGAC
GGGATGGGCGAGAGGAGGCGCCGTGCCAGCGCTGTCGCCGGCGGCCGGGCTGAGGATGAG
AAGGCTGCTTCGGCGCCTGCGGCCGCGGCCCCGGCACCGACGGTGTGGTTCGCGCTGAAG
AGGTCGCTGCACTGCCGGTCCGAGCCGTCGGAGGTGCACGTGCCGAGGCCCAAGGCCGTC
GCCGCCGCCGCTGCGGGCGGTGGCGGGCACCTCTCGGCGATTGTGACCAAGCGCGCGGCG
CCGCGGTCGGGTTGCTCCCGGTCGATAGCCAACCTGCGGGACGTCATCCACGGGAGCAAG
CGCCACCCGGAGCGGCCGCCGAGCTGCAGCCCGAGGTCCATCGGCAGCAGCGAGTTCTTG
AACCCCATCGCCCACGAGGTGGTGCTCAGCACCAACTCCCGCTGCGAGCTCAAGATCACC
GGCTTCGGTGGCTGCGGCGGCCTCGCGGCGGCGGCGGCGGCGGGGGGCGGCGTACTCGCG
TCGCCGCACGAGGCGGACGGCGACGGCGCCGTGGTGTCGTCGTTCGTTGGCACGCTCCGG
CCGGGCACCCCGGGGCCCGGCTGGAGCCACGGCCTGCAGTACAGCGGCTCGTGCCGGGGC
AGCATGCGGTGCACGCCTCCGAGGTCGCCGAATGTGCTGCTGGACAGCAGGGACGCCGCC
GCGGCCGGGGTGACCGCTCACCGCGCGTCCTGCGAGGACGCCGTCAAGAGCTTTGGCAAG
GGCGGCGGCCTAAGCTGCCACCGTTGCGGTGAGCAGTTCAGCAAGTGGGAGGCACTGGAG
GCGCACCACCTTTCCAAGCATGCAGTGACGGAGCTGGTGGAAGGGGACTCGTCGAGGAAG
ATCGTGGAGATCATCTGCCGGACGAGCCTGCTCAAGTCGGAGAGCAGCTGCGTGCGGATC
GAGCGTGTGTTCAAGGTGCACAACACGCAGCGGACGCTGGCGCGCTTCGAGGAGTACCGT
GAGGCGGTGAAGCTGAAGGCGAGCAAGCTGCCCAAGAAGCACCCGCGCTGCCTCGCCGAC
GGCAACGAGCTGCTCCGATTCCACGGCGCCACGCTCTCCTGCGCGCTCGGCGGCGCGGCG
GGCTCCTCCAGCCTCTGCGCCTCCGACAAGTGCGCCGTCTGCCGCATCATCCGCCACGGA
TTCTCCGCCAAGAAGGAAGGCAAGGCCGGCGTCGGCGTCTTCACCACGTCCACCAGCGGC
CGCGCCTACGAGTCCATCGAGGCCTCCGCCGGCGCCGTCGTCGGTGGCGACGACCCGGCG
GCGACGCGCAAGGCGCTGCTGGTGTGCAGGGTCATCGCCGGCAGGGTGCACAAGCCGCTC
GAGAACCTCAAGGAGTTCGCCGGACAGACCGGCTTCGACTCGCTCGCCGGCAAGGTCGGG
CCCTACTCCAACATCGAGGAGCTCTACCTGCTGAACCCGAGGGCGCTGCTCCCGTGCTTC
GTGGTCATCTGCAAGGCTTAACTCCAGAGTCATGCATTGCAAACGACTAATTAATCAAGT
AATTAACCATTCTTTC