Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0785700-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:33318057:33321777:1 gene:Os01g0785700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0785700-01);Pentatricopeptide repeat domain containing protein. (Os01t0785700-02)
Sequence

ATGGCCGCCTCCGCCGCTGCTTCCCGCGCGCAACGCCTATCTCGCATCTTCTCCTCTTCT
TCTCCATCCGTGCGACCACCCAAGCCCGGGCAGGTCAAGGAAGCACCAAAGCCCGCGCCG
ACCAAGAAAGCTCCTGCTCCCGGCGCCGAGGCGAACCCCAACTTGCGCCGGAATGCCATC
GACGACATCATCAAGGGCCTCTTGCGGGAGCGCGACCCGGACAAGCTGGTGTCCGGGTTC
ATCGCCGCCTCGTCCACGCACCCGCGCTTCCGTGCCCGGCACCGCGTGTACGACGTGGCC
GTGTCCCGCCTCGCGACCTTCGGCCGCCTGGACGGCGTCGAGGCCATCATCGACGCGCAG
AAGCCCTTCCTGGAGACCTCCAAGGAGGGATTCGCCGCGCGCCTCATCCGCCTGTACGGC
CACGCATCCATGGCTTCCCACGCCGCTGCGACGTTCCATGACCTCCCCCCGCAGCTTAAG
TCTACCATGACCTTCAACTCTCTCCTCGCAGCCTACGTCGAGGCTGGAGAGTTCGAAGCG
CTTGCCGCCGCGTTCAAGGAGATCCCAGTCTCCAACCCCTCGGTTGTACCTAGCGTGTAC
TCCTATAACATACTCCTTCAAGCGCTATGCAAGGTGCCCGACCTCTCGGCGGCACTTGAT
ACTATGACACTCATGGAGAAGTCTGGAATTTCACCCGATCTGGTCACTTTCAACACGCTA
TTGAATGGATTCTACAACCATGGAGACATGGATGGCGCTGAGAAAGTCTGGGAGATGATT
ACGGAGAGGAATATGGTGCCGGATGCAAAGAACTATAATGCAAAGTTGAGGGGCCTTGTT
GCGCAAGGGAGGATTGAGGATGCAGTTGCAGTGGTTGAAAAAATGGAGAAGGATGGACCA
AAGCCTGATACAATATCCTACAATGAGTTGATTCGAGGGTATTGCAAAGATGGGAGGTTA
GAGGAAGCCAAGAAGCTGTTTGAAGATATGGCAGAAAATGGTTATGTTGCGAATAGGGGG
ACATATCATACCCTCATACCATGTCTTGTCAAGGCTGGTGAGCTCGATTATGCTCTGAAG
TGCTGTCATGAGATATATGGTAAGAACCTTAGAGTGGACTGTTTTGTGCTGCAAGAGGTA
GTGACTGCATTGGTCACGGCATCGAGGGTGGAGGATGCCACCAAGATTGTTGAGCTTGGA
TGGAACAACTCCTACCCACGGAGGATCTTGAATATTCCACATGCTACAGAGAAAAACAAG
GAAGAATCAATTTCAGAAGAGGAAGAGGAGCCTGAAAATGCTTGA

Peptide Sequence

PEP ID

Os01t0785700-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:33318057:33321777:1 gene:Os01g0785700 transcript:Os01t0785700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0785700-01);Pentatricopeptide repeat domain containing protein. (Os01t0785700-02)
Sequence

MAASAAASRAQRLSRIFSSSSPSVRPPKPGQVKEAPKPAPTKKAPAPGAEANPNLRRNAI
DDIIKGLLRERDPDKLVSGFIAASSTHPRFRARHRVYDVAVSRLATFGRLDGVEAIIDAQ
KPFLETSKEGFAARLIRLYGHASMASHAAATFHDLPPQLKSTMTFNSLLAAYVEAGEFEA
LAAAFKEIPVSNPSVVPSVYSYNILLQALCKVPDLSAALDTMTLMEKSGISPDLVTFNTL
LNGFYNHGDMDGAEKVWEMITERNMVPDAKNYNAKLRGLVAQGRIEDAVAVVEKMEKDGP
KPDTISYNELIRGYCKDGRLEEAKKLFEDMAENGYVANRGTYHTLIPCLVKAGELDYALK
CCHEIYGKNLRVDCFVLQEVVTALVTASRVEDATKIVELGWNNSYPRRILNIPHATEKNK
EESISEEEEEPENA

Transcript Sequence

Transcript ID

Os01t0785700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:33318057:33321777:1 gene:Os01g0785700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0785700-01);Pentatricopeptide repeat domain containing protein. (Os01t0785700-02)
Sequence

GCAAACCCCAATCCGCCGCCGCGGCGATCGCCATGGCCGCCTCCGCCGCTGCTTCCCGCG
CGCAACGCCTATCTCGCATCTTCTCCTCTTCTTCTCCATCCGTGCGACCACCCAAGCCCG
GGCAGGTCAAGGAAGCACCAAAGCCCGCGCCGACCAAGAAAGCTCCTGCTCCCGGCGCCG
AGGCGAACCCCAACTTGCGCCGGAATGCCATCGACGACATCATCAAGGGCCTCTTGCGGG
AGCGCGACCCGGACAAGCTGGTGTCCGGGTTCATCGCCGCCTCGTCCACGCACCCGCGCT
TCCGTGCCCGGCACCGCGTGTACGACGTGGCCGTGTCCCGCCTCGCGACCTTCGGCCGCC
TGGACGGCGTCGAGGCCATCATCGACGCGCAGAAGCCCTTCCTGGAGACCTCCAAGGAGG
GATTCGCCGCGCGCCTCATCCGCCTGTACGGCCACGCATCCATGGCTTCCCACGCCGCTG
CGACGTTCCATGACCTCCCCCCGCAGCTTAAGTCTACCATGACCTTCAACTCTCTCCTCG
CAGCCTACGTCGAGGCTGGAGAGTTCGAAGCGCTTGCCGCCGCGTTCAAGGAGATCCCAG
TCTCCAACCCCTCGGTTGTACCTAGCGTGTACTCCTATAACATACTCCTTCAAGCGCTAT
GCAAGGTGCCCGACCTCTCGGCGGCACTTGATACTATGACACTCATGGAGAAGTCTGGAA
TTTCACCCGATCTGGTCACTTTCAACACGCTATTGAATGGATTCTACAACCATGGAGACA
TGGATGGCGCTGAGAAAGTCTGGGAGATGATTACGGAGAGGAATATGGTGCCGGATGCAA
AGAACTATAATGCAAAGTTGAGGGGCCTTGTTGCGCAAGGGAGGATTGAGGATGCAGTTG
CAGTGGTTGAAAAAATGGAGAAGGATGGACCAAAGCCTGATACAATATCCTACAATGAGT
TGATTCGAGGGTATTGCAAAGATGGGAGGTTAGAGGAAGCCAAGAAGCTGTTTGAAGATA
TGGCAGAAAATGGTTATGTTGCGAATAGGGGGACATATCATACCCTCATACCATGTCTTG
TCAAGGCTGGTGAGCTCGATTATGCTCTGAAGTGCTGTCATGAGATATATGGTAAGAACC
TTAGAGTGGACTGTTTTGTGCTGCAAGAGGTAGTGACTGCATTGGTCACGGCATCGAGGG
TGGAGGATGCCACCAAGATTGTTGAGCTTGGATGGAACAACTCCTACCCACGGAGGATCT
TGAATATTCCACATGCTACAGAGAAAAACAAGGAAGAATCAATTTCAGAAGAGGAAGAGG
AGCCTGAAAATGCTTGACAAGGATGTACCTCCATGTGTTCTTCTCTGATCAGTCTTACCG
ATGGTTATCATTTTGCTATAGTATACTAGTCTGCTGTTGCGGACATTGGAAGTATCTCAT
ATTGTCACAAATGAGATGTCGGGTGTGTATTTGTCTCTATCGCTATATTCTGGAAAACTA
GAAACATCTGAGCTATGTTGTTATTCAAGCCTTCCACAGGTGAGCTCACCTATGTAATAA
GCTTGTTTGTCCAATACTTCCTTCATTCCAAAATATAAGGCATAACCACTTTTTTTTCAT
TGTTTCATAATATATAAGGCGTGCAATTAACTAGCATATGTCCCTCCCCTTTAATTTTTT
TTTTAATCCTCTACCGTCAAGATCTCTAATCTCATTGGATGCATGCATAGTATTTATTGG
AGTGGTTCAAATAAGAAGATGATAATATTTTTTTC