Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0782800-00
CDS Infomation	cds chromosome:IRGSP-1.0:1:33168429:33172680:-1 gene:Os01g0782800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 1 description:Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1). (Os01t0782800-00)
Sequence	ATGTCGAGCGGGCACTCGGCGATGGCGTCCTCCTCCGCCGCCGCCGCCTCGTCCGCTCAT GGTGTTGGTGTTGTGCAGAGGTTATGGCTGGAGGAGCAGGAGCGGAAGCCGCCGCCGAAG CGTGGCGGCGGCAAGCGGAGGTGGGCGTGGGCGCCGCTCGAGCCGCGGCGGGCGGGGTGG TGGGCGCGGGAGTGGGACAGGGCGTACCTCCTCGCCTGCGCGGCGGGGCTCATGGTCGAC CCGCTCTTCCTGTACGCCGTGTCCGTCAGCGGGCCGCTCATGTGCGTCTTCCTCGACGGG TGGTTCGCCGCCGCGGTCACCGTGCTCCGGTGCACGGTGGACGCCATGCACGCCTGGAAC TTGCTGATGCGCCTCCGGGCGGCGGTGCGGCCGCCGGAGGAGGACGACGGCGCCGACGAG GAGGTGGCGGCGGAGCGGGGAGCCGGCGGCAATGGCGGCGGGCCGGCGCCGGCTCAGGTG GCGAGGCCGGTGTCCAGGAAAGGGCTCATGCTGGACATGTTCGTCATTCTTCCCGTAATG CAGGTGATCGTCTGGGTGGCGGCACCGGCGATGATACGCGCCGGGTCGACGACGGCGGTA ATGACGGTGCTCCTGGTGTCGTTCCTGTTCGAGTACCTGCCCAAGATATACCACGCCGTC CGCCTCCTGCGCCGGATGCAGAACACCTACGTGTTCGGCACCATCTGGTGGGGCATCGCG CTCAACCTCATGGCCTACTTCGTCGCCGCTCACGCGGTGGGCGCGTGCTGGTACCTGCTC GGGGCGCAGCGCGCGACCAAGTGCCTCAAGGAGCAGTGCGCCCAGGGCGGGAGCGGGTGC GCGCCCGGTGCGCTGGCGTGCGCGGCGCCGCTCTACTACGGTGGCGCCGTGGGCGGCGTG GGCGCGGACAGGCTCGCCTGGGCCCTCGACGCCTCCGCCCGGGGCACGTGCCTCGACAGC GGCGACAACTACCAGTACGGGGCGTACAAGTGGACCGTCATGCTCGTGGCGAACCCGAGC CGGCTGGAGAAGATCTTGCTCCCCATCTTCTGGGGCCTCATGACACTCAGTACATTTGGG AACTTGGCGAGCACAACAGAGTGGCTGGAGATAGTGTTCAACATCATCACTATCACCGGG GGCTTAATCCTCGTGACGATGCTCATAGGAAACATCAAGGTGTTCTTGAACGCGGCGACG TCGAAGAAGCAGGCGATGCAGACGAGGCTGCGGGGCGTGGAGTGGTGGATGAAGCGGAAG AAGCTGCCGCAGAGCTTCCGGCACCGGGTGCGGCAGCACGAGCGGCAGCGGTGGGCGGCC ACGCGCGGCGTCGACGAGTGCCGCATCGTCCGCGACCTGCCGGAGGGGCTCCGCCGCGAC ATCAAGTACCACCTCTGCCTCGACCTCGTCCGCCAGGTGCCACTGTTCCAACACATGGAC GACCTGGTGCTCGAGAACATCTGTGACAGGGTCAAGTCCCTCGTATTCCCCAAAGGAGAA ATTATCGTTAGAGAGGGCGACCCGGTGCAGAGGATGCTGTTCATAGTGCGAGGGCACCTG CAGAGCAGCCAGGTGCTGAGGACCGGCGCCACGAGCTGCTGCACGCTGGGGCCGGGCAAC TTCAGCGGGGACGAGCTGCTGTCGTGGTGCATGCGGCGGCCGTTCCTGGAGCGGCTGCCG GCGTCGTCGTCGACGCTGGTGACGATGGAGAGCACGGAGGCGTTCGGGCTGGAGGCCGCG GACGTCAAGTACGTGACGCAGCACTTCCGCTACACCTTCACCAACGACAGGGTGCGGCGC AGCGCGCGCTACTACTCGCACGGGTGGCGCACGTGGGCGGCCGTCGCCGTGCAGCTCGCG TGGCGGCGGTACAAGCACCGCAAGACGCTCGCGTCGCTCTCCTTCATCCGCCCGCGCAGG CCGCTGTCGCGGTGCTCGTCGCTCGGCGAGGAGAAGCTCCGGCTCTACACCGCGATCCTC ACCTCACCCAAGCCCAACCCCAACCAGGACGACTTGGTGTGA

Peptide Sequence

PEP ID	Os01t0782800-00
PEP Infomation	pep chromosome:IRGSP-1.0:1:33168429:33172680:-1 gene:Os01g0782800 transcript:Os01t0782800-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 1 description:Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1). (Os01t0782800-00)
Sequence	MSSGHSAMASSSAAAASSAHGVGVVQRLWLEEQERKPPPKRGGGKRRWAWAPLEPRRAGW WAREWDRAYLLACAAGLMVDPLFLYAVSVSGPLMCVFLDGWFAAAVTVLRCTVDAMHAWN LLMRLRAAVRPPEEDDGADEEVAAERGAGGNGGGPAPAQVARPVSRKGLMLDMFVILPVM QVIVWVAAPAMIRAGSTTAVMTVLLVSFLFEYLPKIYHAVRLLRRMQNTYVFGTIWWGIA LNLMAYFVAAHAVGACWYLLGAQRATKCLKEQCAQGGSGCAPGALACAAPLYYGGAVGGV GADRLAWALDASARGTCLDSGDNYQYGAYKWTVMLVANPSRLEKILLPIFWGLMTLSTFG NLASTTEWLEIVFNIITITGGLILVTMLIGNIKVFLNAATSKKQAMQTRLRGVEWWMKRK KLPQSFRHRVRQHERQRWAATRGVDECRIVRDLPEGLRRDIKYHLCLDLVRQVPLFQHMD DLVLENICDRVKSLVFPKGEIIVREGDPVQRMLFIVRGHLQSSQVLRTGATSCCTLGPGN FSGDELLSWCMRRPFLERLPASSSTLVTMESTEAFGLEAADVKYVTQHFRYTFTNDRVRR SARYYSHGWRTWAAVAVQLAWRRYKHRKTLASLSFIRPRRPLSRCSSLGEEKLRLYTAIL TSPKPNPNQDDLV

Transcript Sequence

Transcript ID	Os01t0782800-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:33168429:33172680:-1 gene:Os01g0782800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 1 description:Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1). (Os01t0782800-00)
Sequence	GGTGGCACCATCGATCATGTCGAGCGGGCACTCGGCGATGGCGTCCTCCTCCGCCGCCGC CGCCTCGTCCGCTCATGGTGTTGGTGTTGTGCAGAGGTTATGGCTGGAGGAGCAGGAGCG GAAGCCGCCGCCGAAGCGTGGCGGCGGCAAGCGGAGGTGGGCGTGGGCGCCGCTCGAGCC GCGGCGGGCGGGGTGGTGGGCGCGGGAGTGGGACAGGGCGTACCTCCTCGCCTGCGCGGC GGGGCTCATGGTCGACCCGCTCTTCCTGTACGCCGTGTCCGTCAGCGGGCCGCTCATGTG CGTCTTCCTCGACGGGTGGTTCGCCGCCGCGGTCACCGTGCTCCGGTGCACGGTGGACGC CATGCACGCCTGGAACTTGCTGATGCGCCTCCGGGCGGCGGTGCGGCCGCCGGAGGAGGA CGACGGCGCCGACGAGGAGGTGGCGGCGGAGCGGGGAGCCGGCGGCAATGGCGGCGGGCC GGCGCCGGCTCAGGTGGCGAGGCCGGTGTCCAGGAAAGGGCTCATGCTGGACATGTTCGT CATTCTTCCCGTAATGCAGGTGATCGTCTGGGTGGCGGCACCGGCGATGATACGCGCCGG GTCGACGACGGCGGTAATGACGGTGCTCCTGGTGTCGTTCCTGTTCGAGTACCTGCCCAA GATATACCACGCCGTCCGCCTCCTGCGCCGGATGCAGAACACCTACGTGTTCGGCACCAT CTGGTGGGGCATCGCGCTCAACCTCATGGCCTACTTCGTCGCCGCTCACGCGGTGGGCGC GTGCTGGTACCTGCTCGGGGCGCAGCGCGCGACCAAGTGCCTCAAGGAGCAGTGCGCCCA GGGCGGGAGCGGGTGCGCGCCCGGTGCGCTGGCGTGCGCGGCGCCGCTCTACTACGGTGG CGCCGTGGGCGGCGTGGGCGCGGACAGGCTCGCCTGGGCCCTCGACGCCTCCGCCCGGGG CACGTGCCTCGACAGCGGCGACAACTACCAGTACGGGGCGTACAAGTGGACCGTCATGCT CGTGGCGAACCCGAGCCGGCTGGAGAAGATCTTGCTCCCCATCTTCTGGGGCCTCATGAC ACTCAGTACATTTGGGAACTTGGCGAGCACAACAGAGTGGCTGGAGATAGTGTTCAACAT CATCACTATCACCGGGGGCTTAATCCTCGTGACGATGCTCATAGGAAACATCAAGGTGTT CTTGAACGCGGCGACGTCGAAGAAGCAGGCGATGCAGACGAGGCTGCGGGGCGTGGAGTG GTGGATGAAGCGGAAGAAGCTGCCGCAGAGCTTCCGGCACCGGGTGCGGCAGCACGAGCG GCAGCGGTGGGCGGCCACGCGCGGCGTCGACGAGTGCCGCATCGTCCGCGACCTGCCGGA GGGGCTCCGCCGCGACATCAAGTACCACCTCTGCCTCGACCTCGTCCGCCAGGTGCCACT GTTCCAACACATGGACGACCTGGTGCTCGAGAACATCTGTGACAGGGTCAAGTCCCTCGT ATTCCCCAAAGGAGAAATTATCGTTAGAGAGGGCGACCCGGTGCAGAGGATGCTGTTCAT AGTGCGAGGGCACCTGCAGAGCAGCCAGGTGCTGAGGACCGGCGCCACGAGCTGCTGCAC GCTGGGGCCGGGCAACTTCAGCGGGGACGAGCTGCTGTCGTGGTGCATGCGGCGGCCGTT CCTGGAGCGGCTGCCGGCGTCGTCGTCGACGCTGGTGACGATGGAGAGCACGGAGGCGTT CGGGCTGGAGGCCGCGGACGTCAAGTACGTGACGCAGCACTTCCGCTACACCTTCACCAA CGACAGGGTGCGGCGCAGCGCGCGCTACTACTCGCACGGGTGGCGCACGTGGGCGGCCGT CGCCGTGCAGCTCGCGTGGCGGCGGTACAAGCACCGCAAGACGCTCGCGTCGCTCTCCTT CATCCGCCCGCGCAGGCCGCTGTCGCGGTGCTCGTCGCTCGGCGAGGAGAAGCTCCGGCT CTACACCGCGATCCTCACCTCACCCAAGCCCAACCCCAACCAGGACGACTTGGTGTGA