Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0780400-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:33050848:33058490:1 gene:Os01g0780400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:katanin P80c, Katanin regulatory subunit P80c description:Hypothetical gene. (Os01t0780400-01);WD40 repeat-like domain containing protein. (Os01t0780400-02)
Sequence	ATGGACCCCGAGAAGCGCGGCTACAGGCTCCAGGAATTTGTCGCACATGATGCTGAAGTG AGGTCCTTGTCTATCGGCAAGAAGTCAAGCCGTGTGTTTATCACTGGCGGCAGCGACCGC AAGGTTAACCTGTGGGCCATTGGCAAACAGACACCACTTCTGAGCTTATCAGGCCACACT GGCTCAGTTGAGGCTGTTGAGTTTGATACAGCAGAGGTGCTTGTGCTTGCTGGTTCTTCA AATGGTTCCATCAAGCTCTGGGACTTGGAAGAGGCTAAAGTTGTGCGGTCTCTTACTGGG CACAGATCAAGTTGCACCTCTGTTGAATTCCATCCATTTGGCGAGTTTTTTGCATCTGGT TCTTCAGATACAGATCTTAAGATCTGGGATATAAAGAAAAAAGGATGCATTCACACATAT AAGGGTCACAGAGGAGCAATTAGAACAATCAGATTTACACCTGATGGACGATGGGTTGTC ACCGGCGGAGAAGATAATATTGTAAAAGTGTGGGACTTGACAGCTGGAAAGCTTCTACAT GACTTCAAGTTCCATAGTGGGCAAATCCGGTGTATTGATTTTCATCCGCAAGAATTTTTG CTTGCAACAGGCTCAGCTGATCGAACAGTTAAGTTTTGGGATCTTGAAACTTTTGAATTG ATTGGTTCTGCTGGACCCGAGGCTACTGGTGTTCGCTCTACGGTCTTTCACCCAGATGGA AAAACCCTATTCTGTGGGTTAGACCAAAGCCTAAAGGTATTCTCTTGGGAGCCAGTAAGA TGTCATGACGTTGTTGACATGGGATGGAGCAATTTGGCTGACCTTAGTATTTATGAAGGA AAACTCTTGGGATGCTCCTACCACGAATGCCGAGTTGGTGTTTGGGTTGCTGATATATCG CTCATTGGGCCCTATGCTCTTGGTGTTTTGCCCAAAGCAAATTTCTTTGCTGAGCTGGTA CATTCTTTAGACGACAATCCTTCGAAAACGATTGATACCACTGCCAAGTCCATTCCTGCT CTAGCAACGACACATCCAAAAAATCTGTACAAGGTCAAGGAAACAGGGACTGCTGAAAGT GGAATTCGTGGCTCAAATTTGACTCCAGCAAGTATGGATAAAACCAAGAGAGATAAGAGT GGTGCAACTCCTCGAAGACCTGATTCTTCTTTCAAATCATCTATTCAGAGCTCTACTCCA ATGAGGCGCATGAAAGCTGCTGATAGTCCATACACAAATAGAAAAACAGTGGAGCGCAAT TTTGCACAGAGGGATGCCTCGCTAGCATCCCGTACGGGAACAGCTAATAATTCTTCAACT GTTAAAAAAGGCCATCTTGCTGAGTCAGTATCTGTAAAAGATATTTACACTACACCACAG ACTGTTTCTGTGCCTGTCGTTATGCCTAGAGACATTTTAGAGGACAAAACAGCAGGCAGC ATTAGTGGAGGAATCAGAGGGAGAGCTGCAGTTGCAGATGATTTCCATGCTCCTGTTCAT TCAAGGAAACTTTCAGTTAATAGTTTTGTGGGTGATAGTGTTAACTCAACAAAATCCATG CTAACTGATCCTGATGTTTGCTCTGAGGGTTTCTCTGGCTTAAAATTCTCTTTTGGACTA ACTCCATATTACAAGAAAGAAGAATATGATAATGTGGATAAAGTTGATAGTATGGATAAA GGTGATAATACACAAATGACAGAAAAATTGGACAGAACAGTGTCGTTGGAGCATCAACTT CAGTCAAATGATACCTCTGAGCCACCATGTTCTACTACAGAAACAACCAAGGTCAAATAT GTCAGAGGAGTTGCTGTGCCATTAGGAAAAACAAAGTCTCTTGTTGAGAGATGGGAAAAG AGAGAGGCTACTAATGTTGAGTGCTCACCACCAACTGGTTCTTGTGGTGACCGTGCAGTG AGATCTGATGGTCCTTCCTCCTTTTCAGCAGAACCAAGTCAGGCATATGAGAAGGACTTG TCAACAATTGATGAGGCGATGATTCCAATCAATTTGATGCAGAACCATGATGAATTTATA AATGCCGTAAAATCTCGGCTGACAAAGTTAGAGATGATGCGTCATGTCTTTGACCAAAAT GGTATCAAAGGAGCGATTGCTGCAGTGGCAAAGTTGCCTGACAATGCTGTTCTAGCTGAT GTTGTTAGTACTCTGAAGGGGAAACTTGATCTCTTCAACCTAGACATTTTCTTAAGCTTT CTGCCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTG GAATTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCT CATTCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTTGCAACGTTGCAGTCGGTGT TTTAACCATTTGCAAAAGATTCAGCAAGTTCTACACCCGTTGATTATGCGGGGTGGTCAA TCAGCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTTGGTGGTGATCTGA

Peptide Sequence

PEP ID	Os01t0780400-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:33050848:33058490:1 gene:Os01g0780400 transcript:Os01t0780400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:katanin P80c, Katanin regulatory subunit P80c description:Hypothetical gene. (Os01t0780400-01);WD40 repeat-like domain containing protein. (Os01t0780400-02)
Sequence	MDPEKRGYRLQEFVAHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLSLSGHT GSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTGHRSSCTSVEFHPFGEFFASG SSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLH DFKFHSGQIRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATGVRSTVFHPDG KTLFCGLDQSLKVFSWEPVRCHDVVDMGWSNLADLSIYEGKLLGCSYHECRVGVWVADIS LIGPYALGVLPKANFFAELVHSLDDNPSKTIDTTAKSIPALATTHPKNLYKVKETGTAES GIRGSNLTPASMDKTKRDKSGATPRRPDSSFKSSIQSSTPMRRMKAADSPYTNRKTVERN FAQRDASLASRTGTANNSSTVKKGHLAESVSVKDIYTTPQTVSVPVVMPRDILEDKTAGS ISGGIRGRAAVADDFHAPVHSRKLSVNSFVGDSVNSTKSMLTDPDVCSEGFSGLKFSFGL TPYYKKEEYDNVDKVDSMDKGDNTQMTEKLDRTVSLEHQLQSNDTSEPPCSTTETTKVKY VRGVAVPLGKTKSLVERWEKREATNVECSPPTGSCGDRAVRSDGPSSFSAEPSQAYEKDL STIDEAMIPINLMQNHDEFINAVKSRLTKLEMMRHVFDQNGIKGAIAAVAKLPDNAVLAD VVSTLKGKLDLFNLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSA HSAVGVDIQAEQRLQRCSRCFNHLQKIQQVLHPLIMRGGQSAQLAQELNLSLQDLVVI

Transcript Sequence

Transcript ID	Os01t0780400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:33050848:33058490:1 gene:Os01g0780400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:katanin P80c, Katanin regulatory subunit P80c description:Hypothetical gene. (Os01t0780400-01);WD40 repeat-like domain containing protein. (Os01t0780400-02)
Sequence	GGCGACGCGGCTGTCATCTCTCTCGCCCCCGCTCCCTTCCCTTCTCCTGCTCAGAATACC AAGTACTCGGATCCCGAACCCTCTCCCCCCTCTCGTCGTCGACGGCGACACGACGACTCC GCTGCCAGCGCGTCGGCCTGCCCCAGCGGCTCGGAGCAGGGGCGGAGAGACGGGAGGATG GACCCCGAGAAGCGCGGCTACAGGCTCCAGGAATTTGTCGCACATGATGCTGAAGTGAGG TCCTTGTCTATCGGCAAGAAGTCAAGCCGTGTGTTTATCACTGGCGGCAGCGACCGCAAG GTTAACCTGTGGGCCATTGGCAAACAGACACCACTTCTGAGCTTATCAGGCCACACTGGC TCAGTTGAGGCTGTTGAGTTTGATACAGCAGAGGTGCTTGTGCTTGCTGGTTCTTCAAAT GGTTCCATCAAGCTCTGGGACTTGGAAGAGGCTAAAGTTGTGCGGTCTCTTACTGGGCAC AGATCAAGTTGCACCTCTGTTGAATTCCATCCATTTGGCGAGTTTTTTGCATCTGGTTCT TCAGATACAGATCTTAAGATCTGGGATATAAAGAAAAAAGGATGCATTCACACATATAAG GGTCACAGAGGAGCAATTAGAACAATCAGATTTACACCTGATGGACGATGGGTTGTCACC GGCGGAGAAGATAATATTGTAAAAGTGTGGGACTTGACAGCTGGAAAGCTTCTACATGAC TTCAAGTTCCATAGTGGGCAAATCCGGTGTATTGATTTTCATCCGCAAGAATTTTTGCTT GCAACAGGCTCAGCTGATCGAACAGTTAAGTTTTGGGATCTTGAAACTTTTGAATTGATT GGTTCTGCTGGACCCGAGGCTACTGGTGTTCGCTCTACGGTCTTTCACCCAGATGGAAAA ACCCTATTCTGTGGGTTAGACCAAAGCCTAAAGGTATTCTCTTGGGAGCCAGTAAGATGT CATGACGTTGTTGACATGGGATGGAGCAATTTGGCTGACCTTAGTATTTATGAAGGAAAA CTCTTGGGATGCTCCTACCACGAATGCCGAGTTGGTGTTTGGGTTGCTGATATATCGCTC ATTGGGCCCTATGCTCTTGGTGTTTTGCCCAAAGCAAATTTCTTTGCTGAGCTGGTACAT TCTTTAGACGACAATCCTTCGAAAACGATTGATACCACTGCCAAGTCCATTCCTGCTCTA GCAACGACACATCCAAAAAATCTGTACAAGGTCAAGGAAACAGGGACTGCTGAAAGTGGA ATTCGTGGCTCAAATTTGACTCCAGCAAGTATGGATAAAACCAAGAGAGATAAGAGTGGT GCAACTCCTCGAAGACCTGATTCTTCTTTCAAATCATCTATTCAGAGCTCTACTCCAATG AGGCGCATGAAAGCTGCTGATAGTCCATACACAAATAGAAAAACAGTGGAGCGCAATTTT GCACAGAGGGATGCCTCGCTAGCATCCCGTACGGGAACAGCTAATAATTCTTCAACTGTT AAAAAAGGCCATCTTGCTGAGTCAGTATCTGTAAAAGATATTTACACTACACCACAGACT GTTTCTGTGCCTGTCGTTATGCCTAGAGACATTTTAGAGGACAAAACAGCAGGCAGCATT AGTGGAGGAATCAGAGGGAGAGCTGCAGTTGCAGATGATTTCCATGCTCCTGTTCATTCA AGGAAACTTTCAGTTAATAGTTTTGTGGGTGATAGTGTTAACTCAACAAAATCCATGCTA ACTGATCCTGATGTTTGCTCTGAGGGTTTCTCTGGCTTAAAATTCTCTTTTGGACTAACT CCATATTACAAGAAAGAAGAATATGATAATGTGGATAAAGTTGATAGTATGGATAAAGGT GATAATACACAAATGACAGAAAAATTGGACAGAACAGTGTCGTTGGAGCATCAACTTCAG TCAAATGATACCTCTGAGCCACCATGTTCTACTACAGAAACAACCAAGGTCAAATATGTC AGAGGAGTTGCTGTGCCATTAGGAAAAACAAAGTCTCTTGTTGAGAGATGGGAAAAGAGA GAGGCTACTAATGTTGAGTGCTCACCACCAACTGGTTCTTGTGGTGACCGTGCAGTGAGA TCTGATGGTCCTTCCTCCTTTTCAGCAGAACCAAGTCAGGCATATGAGAAGGACTTGTCA ACAATTGATGAGGCGATGATTCCAATCAATTTGATGCAGAACCATGATGAATTTATAAAT GCCGTAAAATCTCGGCTGACAAAGTTAGAGATGATGCGTCATGTCTTTGACCAAAATGGT ATCAAAGGAGCGATTGCTGCAGTGGCAAAGTTGCCTGACAATGCTGTTCTAGCTGATGTT GTTAGTACTCTGAAGGGGAAACTTGATCTCTTCAACCTAGACATTTTCTTAAGCTTTCTG CCTGTTCTTGCGGGGTTACTGACCAGCAAGGCTGAAAGGCATGCCATTGTTTCTTTGGAA TTGTTGTTGGATCTTATAAAGATCTTTGGACCAGTTATTCGTTCAACATTGTCAGCTCAT TCAGCAGTTGGAGTTGATATTCAGGCTGAGCAGAGGTTGCAACGTTGCAGTCGGTGTTTT AACCATTTGCAAAAGATTCAGCAAGTTCTACACCCGTTGATTATGCGGGGTGGTCAATCA GCACAACTTGCCCAAGAACTGAACCTGTCTTTGCAAGACTTGGTGGTGATCTGAAACAAG CGGGGAGGTTCATTCATACTAGTACAACACAGTGAGAGTAGATAACTAGACATCATTCTT TTTGGCAAAAAACGCGCCAGCGCCATACAGTTTTTGTAGCTTGTTGCCATAGCTTTGCAA TTGAGCTGTGTAATTGTGTTTTGACTTGGCTTTTGATTCGGCGTAGTCCCCTGTTGTACA TGTGAGCTTGGCTGTGCATAATCTGTAATTAACATTTGTTACATGGACAGCCCCGGATGA GGGAGAAGCAAGTTCAAAAATGGTTGATGTCAGTTCAACGTGGTGATTC