Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0779400-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:33000078:33010221:-1 gene:Os01g0779400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0779400-01);Similar to chromatin remodeling complex subunit. (Os01t0779400-02)
Sequence	ATGGAGGAAGCGGCGGCGGCGGCGGCGGATTTCGATGGCGGCTTCGGCGGCGCCGGGGAG GACAACCTGTCCATGCCCCTCGGCGACTTCATGGCCTTCCTCGATAACGAGGACTGGAAG GAGCAGCAGCACGAGGGCAATCAAGGTTTAGAGATGCCAGTGGACAGCACAAGTTCTGAA AATGCATTTCAAAACCATGAAGATCCTTCACATAGTCAGATGGATGTAATGGTGGAACTT AACAATGGTGGAGAATCTTTTGATCACTCAGAGGATACCTCTTATAGATTGCTTAGCAAT GATTTTTTGGAAAATTCAAGGAATGGTAATCCTGAGATGCATTTACCAATGGATGCATTA AACCATGCTAAAACTGTTGATGAAGAAATTGTCCCTCCATATGAAGATTATACAAATGGT TTATACTATGATTCGGGATGTGATATGTTCGCAGAGCAATCTGGTTTAAGTGAAGTTAAA TGTGAGGGCACAGGTCCCATGCTTGGTAATTCTGAGCAGGAGGGTAACCATTTCACGTCA GTGCCTATGTTTGACCATAGTGCTGTTATACCTGATATTCCTTACACCGAGTTGAACATC GGTGATGTGCCTGGAAGCATGCAGAATGGAAATGGCAGTTGCCTAACTGTACAAGGAGAA TATCTGCAGGGGGAGTATCAGGAGTATCCTCAGCCAGATTATGGATCGTTTGATATGGCT AATGAAATAGTGCTGCATGATTTGCCACAAAACAATCAGTCATATGAGCTGGAACAATTA CCACAGAATATATGTGAAAGCAGTTCAATGCAAGTGGGCTCTCCAGATCAATATTGTGAT GATACATCTCTGTCGGATTATTACATGGATGATGTATCTTCGATAGAGTCGATGTCCAGC GAGCAGAACCGATCAGAAGATATCTGTTTCCGGAGTGAGTCTAGCACTGACTCTTCTCCG GTGCCCTCAAGCAGAAACTCCACCACTGAGGATGCTGATAAATACTTTGGAGATGCACCA AAACATTTGCAGAATTCCATGTTTCCTGTCAGTACCCAACACCAACACTCATTCATGAAC TCAAGTGATCCAATGCATCCAACTTTTCATAAAAAGTATGACATTCCTAGAAATGGCAGC TCTTCTATTCTGGGTAACTCATCAAGGAATTGCTTCAGTTTAGATAGCAATCGTGATTCT GATTTATGTATTCTTGAGGGTAGTAGAAGTCTTGCTAGTGGACATGTGTTGCCACCCCAA GGATTGCAGCATAACTTTCAACAATCTGTGTGTGCCAATCCTAATCTTCCTCGGTTTGGA GGGAGATACAGGCCGCATGAGGAAAGAATGACTTTGCGGCTTGCATTACAGGATATTTCT CAGCCAAAGTCTGAGGCTAATCCACCTGATGGAGTTTTAGCAGTTCCTTTATTGAGGCAC CAGAAAATTGCCTTGTCATGGATGGTACAAAAGGAGAGAAATGGTTCGAGTTGCTCTGGC GGAATTCTTGCAGATGATCAGGGCCTGGGTAAAACAGTGTCGACTATATCACTGATTTTG ACAGAAAGGTCACCAGTTCCATCTTCAGCTGTTAAGCAAGAACCATGCGAAGCTGTAACC CTTGACGATGACGATGAGGATGACGATGCTGAGCCTCATTTGAAGAAACCGGCACTAGCA CATCTAGCAGATACATGTAAACCTGAAGCGACAAGTAGTACCATTAAGACAGAAAATCCT ATTGCAAATGTTAAGGCTAGACCAGCTGCTGGGACTTTGGTTGTTTGCCCCACGAGTGTT CTACGTCAGTGGGCAGATGAACTGAGGAATAAAGTCACCAGTAAAGCTAACTTGACCTTT TTAGTATATCATGGTAGCAACCGCACAAAGGATCCTAATGATCTTACTAAATACGATGTC GTGTTAACCACATATTCTATAGTAAGCATGGAAGTACCAAAACAATCAAGTCCTGATAGT GATGATGAAGAGAAAGGGAAGCCTGACAGGTATGGTGCTCCTGTTGGCTCCTCAGGCAGC AAAAAACGGAAGACTTCCTCTTCTAAGAAGAACAAAAGTGGAAGCACACCAGAGAGTAAA TTGCCTGAGAAACCTCTCGCAAAAGTTGCATGGTTTAGAGTTATCCTTGATGAAGCACAA AGTATTAAAAATTATCGAACCCAGGTTGCTAGGGCATGCTGGGGTCTGCGAGCCAAAAGA AGATGGTGCTTGTCAGGGACACCTATACAGAATGCTGTTGAGGATCTCTATAGCTATTTC AGATTTCTCAGATATGATCCATATGCTGAATACAAAAAATTTTGCTTCATGATAAAAACA CCAATCAGCAGGAACCCAATTACTGGGTACAAGAAGCTTCAGGTTGTTCTGAAGACAGTA ATGCTGAGGAGGACAAAAGCAACGATGCTTGATGGAAAACCAATAATCTCATTACCCCCA AAGACCGTCTCTCTTAAGACAGTGGACTTCACTAGTGAAGAGCGTGCTTTCTATAACACT CTCGAAGCAGAATCACGAGAGCAGTTCAAGGAGTATGCAGCTGCTGGTACTGTCAAGCAA AACTACGTCAATATCCTGCTGATGCTTTTACGGCTCAGACAGGCATGTGATCACCCTCAC TTAGTTCGAGGTCATGAGTCTACTTCTAGTTGGATGTCTTCATTGGAGATGGCAAAGAAG CTGCCTGTAGAAAGGCAGCAATCGTTGCTGGTTTGCTTGCAATCGTGTTCTGCGATATGT GCTCTCTGCAATGATGCGCCAGAAGATGCCGTTGTTACTATATGTGGTCATGTTTTCTGC AACCAGTGCATACTGGAGCAACTTACCGGTGATGACAGTGTATGTCCAGTGTCCAATTGC CGAGTCCGACTAAATTCAACTTCCTTATTCTCCCGAGGCACCCTTGAATGTGCTCTGAGT AGATCAACCTGTGAGTTTCTGTCTGATGATTCCTGTGAAGACATGGTGCAAGGGAAGCAA CCTAGATTTGATTCGTCTTATGCATCTTCCAAAGTGAGAGCTGCCCTGGATATTCTTCTC TCGTTGCCTAAACTGGATTTAACCCATATGAGTGATGACAAAAATAAAATTGTGCATCCT GACAAAATTAACGGGAATAGTACTCCCTCTGAATATGCTGGCACCAAAATAACTGAGAAG GCCATCGTTTTCTCTCAATGGACTAGAATGCTGGATTTGGTAGAGGTTCATTTGAAATCT TCTCATCTATCTTATCGGAGGCTTGATGGAACAATGTCCGTCGCAGCTCGGGATAGAGCT GTAAAAGACTTCAACACAAATCCAGAGGTTTCTGTTATGATTATGTCTCTCAAAGCTGCA AGTCTTGGTCTGAATATGGTGGCGGCCTGTCATGTACTTTTGCTTGATCTTTGGTGGAAT CCTACTACAGAAGACCAAGCTGTTGACAGAGCGCATCGTATTGGCCAAACTCGACCTGTC ACAGTGTCACGGTTAACCATAAAAGATACCGTTGAAGATCGTATTTTGGCTCTCCAGGAG AAAAAACGGGAGATGGTGGCTTCTGCATTTGGGGAAGACAAATCTGGTGCCCATCAAACT AGATTGACGGTGGAAGACTTGAACTATTTGTTTATGGTTTAG

Peptide Sequence

PEP ID	Os01t0779400-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:33000078:33010221:-1 gene:Os01g0779400 transcript:Os01t0779400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0779400-01);Similar to chromatin remodeling complex subunit. (Os01t0779400-02)
Sequence	MEEAAAAAADFDGGFGGAGEDNLSMPLGDFMAFLDNEDWKEQQHEGNQGLEMPVDSTSSE NAFQNHEDPSHSQMDVMVELNNGGESFDHSEDTSYRLLSNDFLENSRNGNPEMHLPMDAL NHAKTVDEEIVPPYEDYTNGLYYDSGCDMFAEQSGLSEVKCEGTGPMLGNSEQEGNHFTS VPMFDHSAVIPDIPYTELNIGDVPGSMQNGNGSCLTVQGEYLQGEYQEYPQPDYGSFDMA NEIVLHDLPQNNQSYELEQLPQNICESSSMQVGSPDQYCDDTSLSDYYMDDVSSIESMSS EQNRSEDICFRSESSTDSSPVPSSRNSTTEDADKYFGDAPKHLQNSMFPVSTQHQHSFMN SSDPMHPTFHKKYDIPRNGSSSILGNSSRNCFSLDSNRDSDLCILEGSRSLASGHVLPPQ GLQHNFQQSVCANPNLPRFGGRYRPHEERMTLRLALQDISQPKSEANPPDGVLAVPLLRH QKIALSWMVQKERNGSSCSGGILADDQGLGKTVSTISLILTERSPVPSSAVKQEPCEAVT LDDDDEDDDAEPHLKKPALAHLADTCKPEATSSTIKTENPIANVKARPAAGTLVVCPTSV LRQWADELRNKVTSKANLTFLVYHGSNRTKDPNDLTKYDVVLTTYSIVSMEVPKQSSPDS DDEEKGKPDRYGAPVGSSGSKKRKTSSSKKNKSGSTPESKLPEKPLAKVAWFRVILDEAQ SIKNYRTQVARACWGLRAKRRWCLSGTPIQNAVEDLYSYFRFLRYDPYAEYKKFCFMIKT PISRNPITGYKKLQVVLKTVMLRRTKATMLDGKPIISLPPKTVSLKTVDFTSEERAFYNT LEAESREQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPHLVRGHESTSSWMSSLEMAKK LPVERQQSLLVCLQSCSAICALCNDAPEDAVVTICGHVFCNQCILEQLTGDDSVCPVSNC RVRLNSTSLFSRGTLECALSRSTCEFLSDDSCEDMVQGKQPRFDSSYASSKVRAALDILL SLPKLDLTHMSDDKNKIVHPDKINGNSTPSEYAGTKITEKAIVFSQWTRMLDLVEVHLKS SHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN PTTEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKREMVASAFGEDKSGAHQT RLTVEDLNYLFMV

Transcript Sequence

Transcript ID	Os01t0779400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:33000078:33010221:-1 gene:Os01g0779400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0779400-01);Similar to chromatin remodeling complex subunit. (Os01t0779400-02)
Sequence	TTCGTTTCCACCACCACCCCCCACCACCACGACGCGGATGGCATCTTCGTCGTCTTCGTC CTAGCGCGCGGCGGCCGCCACGCGACCCTGTTTGAGAGGGGGAAAGGGGGGTTCCGCTCG GCTAGGCGGAGGAAGGACGCAGCCGCCCCTGTCCCGCGGCGAATTTGGATGATCGAGGCC CGCCGTCGAGGGTAAGGAGTGATGGAGGAAGCGGCGGCGGCGGCGGCGGATTTCGATGGC GGCTTCGGCGGCGCCGGGGAGGACAACCTGTCCATGCCCCTCGGCGACTTCATGGCCTTC CTCGATAACGAGGACTGGAAGGAGCAGCAGCACGAGGGCAATCAAGGTTTAGAGATGCCA GTGGACAGCACAAGTTCTGAAAATGCATTTCAAAACCATGAAGATCCTTCACATAGTCAG ATGGATGTAATGGTGGAACTTAACAATGGTGGAGAATCTTTTGATCACTCAGAGGATACC TCTTATAGATTGCTTAGCAATGATTTTTTGGAAAATTCAAGGAATGGTAATCCTGAGATG CATTTACCAATGGATGCATTAAACCATGCTAAAACTGTTGATGAAGAAATTGTCCCTCCA TATGAAGATTATACAAATGGTTTATACTATGATTCGGGATGTGATATGTTCGCAGAGCAA TCTGGTTTAAGTGAAGTTAAATGTGAGGGCACAGGTCCCATGCTTGGTAATTCTGAGCAG GAGGGTAACCATTTCACGTCAGTGCCTATGTTTGACCATAGTGCTGTTATACCTGATATT CCTTACACCGAGTTGAACATCGGTGATGTGCCTGGAAGCATGCAGAATGGAAATGGCAGT TGCCTAACTGTACAAGGAGAATATCTGCAGGGGGAGTATCAGGAGTATCCTCAGCCAGAT TATGGATCGTTTGATATGGCTAATGAAATAGTGCTGCATGATTTGCCACAAAACAATCAG TCATATGAGCTGGAACAATTACCACAGAATATATGTGAAAGCAGTTCAATGCAAGTGGGC TCTCCAGATCAATATTGTGATGATACATCTCTGTCGGATTATTACATGGATGATGTATCT TCGATAGAGTCGATGTCCAGCGAGCAGAACCGATCAGAAGATATCTGTTTCCGGAGTGAG TCTAGCACTGACTCTTCTCCGGTGCCCTCAAGCAGAAACTCCACCACTGAGGATGCTGAT AAATACTTTGGAGATGCACCAAAACATTTGCAGAATTCCATGTTTCCTGTCAGTACCCAA CACCAACACTCATTCATGAACTCAAGTGATCCAATGCATCCAACTTTTCATAAAAAGTAT GACATTCCTAGAAATGGCAGCTCTTCTATTCTGGGTAACTCATCAAGGAATTGCTTCAGT TTAGATAGCAATCGTGATTCTGATTTATGTATTCTTGAGGGTAGTAGAAGTCTTGCTAGT GGACATGTGTTGCCACCCCAAGGATTGCAGCATAACTTTCAACAATCTGTGTGTGCCAAT CCTAATCTTCCTCGGTTTGGAGGGAGATACAGGCCGCATGAGGAAAGAATGACTTTGCGG CTTGCATTACAGGATATTTCTCAGCCAAAGTCTGAGGCTAATCCACCTGATGGAGTTTTA GCAGTTCCTTTATTGAGGCACCAGAAAATTGCCTTGTCATGGATGGTACAAAAGGAGAGA AATGGTTCGAGTTGCTCTGGCGGAATTCTTGCAGATGATCAGGGCCTGGGTAAAACAGTG TCGACTATATCACTGATTTTGACAGAAAGGTCACCAGTTCCATCTTCAGCTGTTAAGCAA GAACCATGCGAAGCTGTAACCCTTGACGATGACGATGAGGATGACGATGCTGAGCCTCAT TTGAAGAAACCGGCACTAGCACATCTAGCAGATACATGTAAACCTGAAGCGACAAGTAGT ACCATTAAGACAGAAAATCCTATTGCAAATGTTAAGGCTAGACCAGCTGCTGGGACTTTG GTTGTTTGCCCCACGAGTGTTCTACGTCAGTGGGCAGATGAACTGAGGAATAAAGTCACC AGTAAAGCTAACTTGACCTTTTTAGTATATCATGGTAGCAACCGCACAAAGGATCCTAAT GATCTTACTAAATACGATGTCGTGTTAACCACATATTCTATAGTAAGCATGGAAGTACCA AAACAATCAAGTCCTGATAGTGATGATGAAGAGAAAGGGAAGCCTGACAGGTATGGTGCT CCTGTTGGCTCCTCAGGCAGCAAAAAACGGAAGACTTCCTCTTCTAAGAAGAACAAAAGT GGAAGCACACCAGAGAGTAAATTGCCTGAGAAACCTCTCGCAAAAGTTGCATGGTTTAGA GTTATCCTTGATGAAGCACAAAGTATTAAAAATTATCGAACCCAGGTTGCTAGGGCATGC TGGGGTCTGCGAGCCAAAAGAAGATGGTGCTTGTCAGGGACACCTATACAGAATGCTGTT GAGGATCTCTATAGCTATTTCAGATTTCTCAGATATGATCCATATGCTGAATACAAAAAA TTTTGCTTCATGATAAAAACACCAATCAGCAGGAACCCAATTACTGGGTACAAGAAGCTT CAGGTTGTTCTGAAGACAGTAATGCTGAGGAGGACAAAAGCAACGATGCTTGATGGAAAA CCAATAATCTCATTACCCCCAAAGACCGTCTCTCTTAAGACAGTGGACTTCACTAGTGAA GAGCGTGCTTTCTATAACACTCTCGAAGCAGAATCACGAGAGCAGTTCAAGGAGTATGCA GCTGCTGGTACTGTCAAGCAAAACTACGTCAATATCCTGCTGATGCTTTTACGGCTCAGA CAGGCATGTGATCACCCTCACTTAGTTCGAGGTCATGAGTCTACTTCTAGTTGGATGTCT TCATTGGAGATGGCAAAGAAGCTGCCTGTAGAAAGGCAGCAATCGTTGCTGGTTTGCTTG CAATCGTGTTCTGCGATATGTGCTCTCTGCAATGATGCGCCAGAAGATGCCGTTGTTACT ATATGTGGTCATGTTTTCTGCAACCAGTGCATACTGGAGCAACTTACCGGTGATGACAGT GTATGTCCAGTGTCCAATTGCCGAGTCCGACTAAATTCAACTTCCTTATTCTCCCGAGGC ACCCTTGAATGTGCTCTGAGTAGATCAACCTGTGAGTTTCTGTCTGATGATTCCTGTGAA GACATGGTGCAAGGGAAGCAACCTAGATTTGATTCGTCTTATGCATCTTCCAAAGTGAGA GCTGCCCTGGATATTCTTCTCTCGTTGCCTAAACTGGATTTAACCCATATGAGTGATGAC AAAAATAAAATTGTGCATCCTGACAAAATTAACGGGAATAGTACTCCCTCTGAATATGCT GGCACCAAAATAACTGAGAAGGCCATCGTTTTCTCTCAATGGACTAGAATGCTGGATTTG GTAGAGGTTCATTTGAAATCTTCTCATCTATCTTATCGGAGGCTTGATGGAACAATGTCC GTCGCAGCTCGGGATAGAGCTGTAAAAGACTTCAACACAAATCCAGAGGTTTCTGTTATG ATTATGTCTCTCAAAGCTGCAAGTCTTGGTCTGAATATGGTGGCGGCCTGTCATGTACTT TTGCTTGATCTTTGGTGGAATCCTACTACAGAAGACCAAGCTGTTGACAGAGCGCATCGT ATTGGCCAAACTCGACCTGTCACAGTGTCACGGTTAACCATAAAAGATACCGTTGAAGAT CGTATTTTGGCTCTCCAGGAGAAAAAACGGGAGATGGTGGCTTCTGCATTTGGGGAAGAC AAATCTGGTGCCCATCAAACTAGATTGACGGTGGAAGACTTGAACTATTTGTTTATGGTT TAGCATTTCTCCTGAGATTGGACACAATTTTGCTCGTGGGATGGTGTAACTTGCATCTAT AGGTGAAATATCTGTCAGGAGATAGCATTTCTCTAGGCGTCTAGTGTTTCTAGTTTGTAC AGGTGCTCAGATTTTGTAGTTAAAGGTGGCATTGTGGTGCGATTCATTTTTTCTCCGTGC AAGTGGCAACTCATCAGGTAATTTTTCGATGAGCTGCAGTGGTGTCTTTTGATCATGAAG ATACAAAGGAGAACGTCATTAGCTAACGCCATATTTGTACATAGTTTTCACCAGCAATCT TAACTCATCTTGAGCTTCGCATTTCAGCCGTATGGTTGTACATCATAAACCATGTAAAAG ATTAAGCTGAACTTGTCTTCGACAATTTTTTTCAGTTGATCAAACATGATAGTTTATGG