Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0769900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:32470279:32476597:1 gene:Os01g0769900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PTAC12 description:Similar to PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12). (Os01t0769900-01)
Sequence	ATGGCGTCGTGCTCCCGCACTTGGCTCCTCCCAGGCATGGCGCCGCAGGCCACCGCCCAG ACTGTTCCTCGCCCCCTCCAGTCCTTGAAGGTGTTTGCTGGATTGCCTCACCGGAGAAGG GTGCTGTTTTCTGGTGTGTCGAGCAGAACGCGAAGAGGCAGGATCAGGAGCGTCAAGGAC GACTCGCTCCATTTTGATCCATCTAAGATCGAGGCGCCACCGTACTCCAGTTACTTCGAC TCCACGTCGGGCCAGCTCGAGCCGGCGTCGGGTGCTCGGGCAAGCATACCTGGGCAGGAG TACTGGCCGGAGGGCACTGCATCCCGCGTACGCGCTGCCCGTGCACCTGCACCGGTCGGG GAATCAGCTGGGACACCGTCGTTTGGTAAGAAGCCCGGGAGTAGAAGGAAAGGGTACAAG GAGCAGGTAGCATCAGCGACGGCAGGGAGAGGCACGGAGACCAGTGGAGATGAGGGAGAG TCGGTTGTGGCCATTGAGGCCTCATCAGATGAGACACTGGAGGAGACAAAGGATTCATTG GATGAGTACGTCGTTTATGAGATGCCCAAGGAAGAAAATTTGAGTGAATATGAGATGGAC AAGATGATGGGACGGCCACACCCGTTCGTTGACCCGCAGAAGGCAATGTCTGTAGGGGAA CCAAAATCTAGTGAAGAGCTGTGGTGGAACTGGAGGAGGAAGTCTGAGGAAAATGAAATG TGGTCAAGATGGCAGAGGAGGCGTCCAGATGTTGACACGGTCTTTGCAAAAGCAATGGCA GAAACTGGGCAGATCAAAATATTTGGGGACCACCCTACCAGAACAGAAGCTGCTCTTGCC AAGGCAAGAAGACATTTATTCAAAGAGGAAAGGTTAGAAGCAGAACAAAGGAGACTAGAA GAAATAGGGCCAATAGCATACTATTCGGAATGGGTTGAAGCGTATAAAAACAAAGACACT TCACGAGAAGCTGTACAGAAACACTTTGAGGAGACTGGCGAAGATGAGAATACTCAACTT ATAACAATGTTTCAACACCAAACTGCTGGGGAATTCCGTATCATGATGGGCACTGATGTT CGCATACAACGAGATCCTTTGGCAATGAGGATGCGGGAAGACCAGATCAAACAGATTTGG GGTGGTGATCCTGTTTACCCAACCATTAACTACGTTCATGATCCTGACGAAGTAGCGGAC TACAGGGGTCCAGAATTTCATGAGCCTACACCTGAAGTTGTACCTTACTTGATGGAGCAT GGTATAATGATAACAAAGGAAGAGCTATATGCCCGTTTAAATGAAGAGATGGAAGACATC AATCAGGACATTACGTATCTTCCTGAAGTCAGAGATCCCATGGCTACTGCTGTTGATATT GGGGAGCATTCTTACAACGAAGATAGTGATGACGATGAGGAGGATGCTGACAAAGTTGTT GCGCAGCCTGAGTCACTAGAGGATGATGAAGATGATGGTGATGATGCTGAGGATGCTGAA GGGAAGGTCAGTCGTAATTGGAGTGTTCTAAAAACTACCGGACAGGCTGAAAATCCAAAG GAAAAGTCGAAGAAAGATCAACTGTCGCTAAAAGAAGCTATTGCAGATTCTGAGAACTTG ACTGATTTTCTTATGGACTTCGAAGAAGATGAGTAA

Peptide Sequence

PEP ID	Os01t0769900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:32470279:32476597:1 gene:Os01g0769900 transcript:Os01t0769900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PTAC12 description:Similar to PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12). (Os01t0769900-01)
Sequence	MASCSRTWLLPGMAPQATAQTVPRPLQSLKVFAGLPHRRRVLFSGVSSRTRRGRIRSVKD DSLHFDPSKIEAPPYSSYFDSTSGQLEPASGARASIPGQEYWPEGTASRVRAARAPAPVG ESAGTPSFGKKPGSRRKGYKEQVASATAGRGTETSGDEGESVVAIEASSDETLEETKDSL DEYVVYEMPKEENLSEYEMDKMMGRPHPFVDPQKAMSVGEPKSSEELWWNWRRKSEENEM WSRWQRRRPDVDTVFAKAMAETGQIKIFGDHPTRTEAALAKARRHLFKEERLEAEQRRLE EIGPIAYYSEWVEAYKNKDTSREAVQKHFEETGEDENTQLITMFQHQTAGEFRIMMGTDV RIQRDPLAMRMREDQIKQIWGGDPVYPTINYVHDPDEVADYRGPEFHEPTPEVVPYLMEH GIMITKEELYARLNEEMEDINQDITYLPEVRDPMATAVDIGEHSYNEDSDDDEEDADKVV AQPESLEDDEDDGDDAEDAEGKVSRNWSVLKTTGQAENPKEKSKKDQLSLKEAIADSENL TDFLMDFEEDE

Transcript Sequence

Transcript ID	Os01t0769900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:32470279:32476597:1 gene:Os01g0769900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PTAC12 description:Similar to PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12). (Os01t0769900-01)
Sequence	ATCCTGTCCCCTTCCGAAGACCAAACCGGCTACCTGAACTTCGGTGCGCGTCCATGGAGC TCAACCCATCCGCTTCCCTCCCCTAGCTCTCTCTCGTCCACCTCGGGTTCCAACCGCAGC ATCGGAGGCGGAGCCATGGCGTCGTGCTCCCGCACTTGGCTCCTCCCAGGCATGGCGCCG CAGGCCACCGCCCAGACTGTTCCTCGCCCCCTCCAGTCCTTGAAGGTGTTTGCTGGATTG CCTCACCGGAGAAGGGTGCTGTTTTCTGGTGTGTCGAGCAGAACGCGAAGAGGCAGGATC AGGAGCGTCAAGGACGACTCGCTCCATTTTGATCCATCTAAGATCGAGGCGCCACCGTAC TCCAGTTACTTCGACTCCACGTCGGGCCAGCTCGAGCCGGCGTCGGGTGCTCGGGCAAGC ATACCTGGGCAGGAGTACTGGCCGGAGGGCACTGCATCCCGCGTACGCGCTGCCCGTGCA CCTGCACCGGTCGGGGAATCAGCTGGGACACCGTCGTTTGGTAAGAAGCCCGGGAGTAGA AGGAAAGGGTACAAGGAGCAGGTAGCATCAGCGACGGCAGGGAGAGGCACGGAGACCAGT GGAGATGAGGGAGAGTCGGTTGTGGCCATTGAGGCCTCATCAGATGAGACACTGGAGGAG ACAAAGGATTCATTGGATGAGTACGTCGTTTATGAGATGCCCAAGGAAGAAAATTTGAGT GAATATGAGATGGACAAGATGATGGGACGGCCACACCCGTTCGTTGACCCGCAGAAGGCA ATGTCTGTAGGGGAACCAAAATCTAGTGAAGAGCTGTGGTGGAACTGGAGGAGGAAGTCT GAGGAAAATGAAATGTGGTCAAGATGGCAGAGGAGGCGTCCAGATGTTGACACGGTCTTT GCAAAAGCAATGGCAGAAACTGGGCAGATCAAAATATTTGGGGACCACCCTACCAGAACA GAAGCTGCTCTTGCCAAGGCAAGAAGACATTTATTCAAAGAGGAAAGGTTAGAAGCAGAA CAAAGGAGACTAGAAGAAATAGGGCCAATAGCATACTATTCGGAATGGGTTGAAGCGTAT AAAAACAAAGACACTTCACGAGAAGCTGTACAGAAACACTTTGAGGAGACTGGCGAAGAT GAGAATACTCAACTTATAACAATGTTTCAACACCAAACTGCTGGGGAATTCCGTATCATG ATGGGCACTGATGTTCGCATACAACGAGATCCTTTGGCAATGAGGATGCGGGAAGACCAG ATCAAACAGATTTGGGGTGGTGATCCTGTTTACCCAACCATTAACTACGTTCATGATCCT GACGAAGTAGCGGACTACAGGGGTCCAGAATTTCATGAGCCTACACCTGAAGTTGTACCT TACTTGATGGAGCATGGTATAATGATAACAAAGGAAGAGCTATATGCCCGTTTAAATGAA GAGATGGAAGACATCAATCAGGACATTACGTATCTTCCTGAAGTCAGAGATCCCATGGCT ACTGCTGTTGATATTGGGGAGCATTCTTACAACGAAGATAGTGATGACGATGAGGAGGAT GCTGACAAAGTTGTTGCGCAGCCTGAGTCACTAGAGGATGATGAAGATGATGGTGATGAT GCTGAGGATGCTGAAGGGAAGGTCAGTCGTAATTGGAGTGTTCTAAAAACTACCGGACAG GCTGAAAATCCAAAGGAAAAGTCGAAGAAAGATCAACTGTCGCTAAAAGAAGCTATTGCA GATTCTGAGAACTTGACTGATTTTCTTATGGACTTCGAAGAAGATGAGTAATATCTGGGC ATTTACTTTACTATGCTGCACGTTACACATGGCTCAAAGCTGCATCCTTTATCTGCCTGA GGGATTCGGAAAAATCATCCAAAAGCTCATGACAATCTGGAAATTGTGCCTCGTCCACGG CAAGATTTACCATCATGGTGTTAACGTAACTTTGAAAATTCACGGTTAAGGCCTGCACAA GCAAACCAAACATTTAGATGTAAACTACGTCTTGCTAATCGCATCTGTACCGAGATTCCA TGACAAAGGGAAAAAAAATACTTTCACCATCTACAACGCTGAAGGATTATTCATCACTAT GCACTTGTTATCCTTGTTATAAAAGTGTCATACAAGGGCTTAATTACTTCTTTTTTCAAC AGATCAAAGCAATTAGTTTCAGTCAGATTACCTTATTTTCGCGATGACTTAGTGATATCT GCTAGACAGCTACCAGGCCATATTTCATGGGAAATTTTTGGTTTTTTTTTTCATTAGCAG ATTTTTTTTTTCATACTGTTTTTGCCACTAAGCCAAGGATCATCTCACGTTCGTCATTCA TTTGTTTTTTAGCCCTAGCGACAAAAGTGAGATACTCATAGCAAAAACAAGGGAACTTAC TTCTGGAGGTCCATAGCCGCTAGGGGCAATGAAGACAACTGGATGCCCACAAAACTCCAC CTGTTCAACTGGGCCGATCATGTTGGAGAATGATATGGTAGTATGAGAGATCATACGATG GAAGATAGCAGCTGCTGCCTGTTTGATTCACAAGTTGCAATGATATTGGGAACAAAGAAA TCCACAGGGGATGTTTTTTGGCGCATGGCTCAAAATTTGGCGCTGTAATGCTCTTTCTAG GAAACAAGGAAGTTAACCACTGCCAACAACTGGGACTGTACACAATTTCTAGTGAATATC ACAATCTTGTACACCTACGATTGTATTTTCTTGATAACTAAATTAGCATGGTTAGACAGC AAATACTAAATCAGGTATTCAGTTATACTTGGAGTATCCTGAAATCTATTGTTTTGTGAA CTAAACCAGTGCTTGTCAATAGAAACAAAGTGATTATC