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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0765000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:32233186:32238980:-1 gene:Os01g0765000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:STRIPE 2 description:Putative dCMP deaminase, Chloroplast development (Os01t0765000-01);Similar to deoxycytidylate deaminase. (Os01t0765000-02)
Sequence

ATGGCCTCGGCGAGGGACCTCGCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCC
GCCGCGGCCGCGCTGCGCTTCCTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGC
CCGCCCACGCCGTGCGCCGAGCACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCG
GTGCAGTCCCCCTTCGATCCCGCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTC
ATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCA
TGCTTGGTTAGCCAAGAGGGGATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGT
TGTTCTGACAATAAGCTACCCTGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACA
AAATACCCCTATGTTGTTCATGCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCA
GCGGCTGGACAGAAATTATATGTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATT
ATCCAGTCAGGTGTATCTGAAGTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGAT
TATGTTTACGTAGCCTCGCACAAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACAC
CAACCACAGATGTCACAAATACCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCA
ATGAACGCAGCAAGTATATTTAGCTGA

Peptide Sequence

PEP ID

Os01t0765000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:32233186:32238980:-1 gene:Os01g0765000 transcript:Os01t0765000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:STRIPE 2 description:Putative dCMP deaminase, Chloroplast development (Os01t0765000-01);Similar to deoxycytidylate deaminase. (Os01t0765000-02)
Sequence

MASARDLAVASISAAVGAAAAAAALRFLSSYGASSAKQRSPPTPCAEHLAVNGCAAERPP
VQSPFDPAKREGYISWDDYFMAIAFLSAKRSKDPNRQVGACLVSQEGIILGIGYNGFPRG
CSDNKLPWAKKSAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAKII
IQSGVSEVIYFVEKRIDNSDYVYVASHKLLSMAGVKVRKHQPQMSQIPIKFQEPRNGEPS
MNAASIFS

Transcript Sequence

Transcript ID

Os01t0765000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:32233186:32238980:-1 gene:Os01g0765000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:STRIPE 2 description:Putative dCMP deaminase, Chloroplast development (Os01t0765000-01);Similar to deoxycytidylate deaminase. (Os01t0765000-02)
Sequence

AGTCTCCCTCCGGACCCAAGCCCCGCTCGAGCGAGCGCGATGGCCTCGGCGAGGGACCTC
GCCGTAGCGTCCATCTCCGCCGCCGTGGGCGCCGCAGCCGCCGCGGCCGCGCTGCGCTTC
CTGTCATCCTACGGGGCCAGCTCTGCCAAGCAGCGGAGCCCGCCCACGCCGTGCGCCGAG
CACCTCGCGGTCAACGGATGCGCCGCCGAGCGCCCGCCGGTGCAGTCCCCCTTCGATCCC
GCCAAGAGGGAAGGGTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCG
GCCAAGCGGTCCAAGGATCCTAATCGGCAGGTTGGAGCATGCTTGGTTAGCCAAGAGGGG
ATAATCCTAGGAATAGGGTATAATGGATTTCCTAGAGGTTGTTCTGACAATAAGCTACCC
TGGGCAAAGAAATCTGCCAAGGGAGATCCATTGGAGACAAAATACCCCTATGTTGTTCAT
GCTGAGGTTAATGCTATTTTAAATACAAACCATGCTTCAGCGGCTGGACAGAAATTATAT
GTTACCATGTTCCCCTGCAATGAGTGTGCTAAGATTATTATCCAGTCAGGTGTATCTGAA
GTCATATATTTTGTAGAGAAAAGGATTGACAACTCTGATTATGTTTACGTAGCCTCGCAC
AAGTTGTTATCAATGGCTGGTGTAAAGGTTAGGAAACACCAACCACAGATGTCACAAATA
CCAATCAAGTTTCAGGAGCCTCGAAACGGTGAGCCTTCAATGAACGCAGCAAGTATATTT
AGCTGATCTTATCTTTGTTTGTTGTCTCCTTATCTACATATACCTTTACTGTGCGGTTAT
GTGTAAGATTTCTGTTGATCATGGCATCAAAGAACAAATGCTTGTCAGTCATTCAACGTC
ATCGATTGCCATATCCTCCGGGGTGCTGTTGACCGTCTTGTTGTAAACTTGTAATCCGTG
AGACTACTAGATCATCAAAACAAATTATGGCTGTGTTTAGTTC