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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0763200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:32106876:32109742:-1 gene:Os01g0763200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5, TEOSINTE BRANCHED1/CYCLOIDEA/PCFs 5 description:TCP family transcription factor, Strigolactone and cytokinin controlled mesocotyl elongation in darkness (Os01t0763200-01)
Sequence

ATGATACTAGGAAGCAACCAAGCGGCCGCCGCCGCGGCTGCGGCAGCTGCGGCGGAGGAG
GAGGCGGCGGAGCTAGCGAGGAAGCACACGGCGGCGGTGGCGACGTCGCGGCAATGGTCG
GCGCAGACGGAGTCGCGGATCGTGCGCGTGTCGCGGGTGTTCGGCGGCAAGGACCGGCAC
AGCAAGGTGAAGACGGTGAAGGGGCTGCGCGACCGGCGGGTGCGGCTGTCGGTGCCGACG
GCGATCCAGCTGTACGACCTGCAGGACCGGCTGGGGCTCAACCAGCCCAGCAAGGTGGTG
GACTGGCTGCTCAACGCGGCGCGCCACGAGATCGACAAGCTGCCGCCGCTGCAGTTCCCG
CCGCAGGACCACCTCTGCATGGGACACCACCACCACCTGCCGTCGGCCATGCCGCTGATG
CACCACCACGGCCACCACCACCACGCCGACGACGATAAGTACCACGTCGCGGCGGCGGCG
GCCGCGCTGGCCGCGGAGAAGGAGGCGGCGGCGGCCGGCGGCGGAGGAGGAGGAGGGGGA
GACGACGTCGACGGCGGGGGCGGCGGCGGAGCGGCGCACATAGTGGGGAGGTTCCCCGCC
GGTGGCTACCACCGGTTCATGGGGCTGAACAACCCGCTGGGGATGGTCAACAGCGCCGCC
GGCGCCGCCATGCCGTTCCACTACGCCGGTGAGTCATGGAATAATGGCAGCGTGCAAGAC
AGCGGCGCCGGCTCGCCGCAGGTGGCCGCCGCCGCGGCTCACCACACCTCGCCGTTCCCT
TCACTGCTTTCCTTGGCTCCAGGGCCGCATCATCAGCTGGTGTTCTACTCCTCCGAGGCC
GAGCAGTTCACAGTAGACAACCTTGGCTCGCAGGGCTTGTCCCTGAGCTCGGCGAGAGCT
TTCCATGATCAGACAGGAAGCTAA

Peptide Sequence

PEP ID

Os01t0763200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:32106876:32109742:-1 gene:Os01g0763200 transcript:Os01t0763200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5, TEOSINTE BRANCHED1/CYCLOIDEA/PCFs 5 description:TCP family transcription factor, Strigolactone and cytokinin controlled mesocotyl elongation in darkness (Os01t0763200-01)
Sequence

MILGSNQAAAAAAAAAAAEEEAAELARKHTAAVATSRQWSAQTESRIVRVSRVFGGKDRH
SKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFP
PQDHLCMGHHHHLPSAMPLMHHHGHHHHADDDKYHVAAAAAALAAEKEAAAAGGGGGGGG
DDVDGGGGGGAAHIVGRFPAGGYHRFMGLNNPLGMVNSAAGAAMPFHYAGESWNNGSVQD
SGAGSPQVAAAAAHHTSPFPSLLSLAPGPHHQLVFYSSEAEQFTVDNLGSQGLSLSSARA
FHDQTGS

Transcript Sequence

Transcript ID

Os01t0763200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:32106876:32109742:-1 gene:Os01g0763200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5, TEOSINTE BRANCHED1/CYCLOIDEA/PCFs 5 description:TCP family transcription factor, Strigolactone and cytokinin controlled mesocotyl elongation in darkness (Os01t0763200-01)
Sequence

TTCCACATCCTTCTCTCCGACGACGCTACCTAGCTAAGCTGCTGCTCTGTAGCTGGCAGG
CTAGGGTTTACGCTAGCTGATCGGAGCTACCACCAACGCCGGTGGTTGGTAGCTCGGCGG
CGGCGGGATCTTCTTCTTGCTCGGGTTAATTGGCGAGCTATATATATATCTAGCTCATCG
GCGGGAAGGGGAAATCTCGGCTGACTTGAAGGGATCGGAGGAGGCCATATATATGCATGG
CTGAGTTCTTGTAACTAGCTAGCTAGGTGGATCGAGGACTGACGATGGGAGGATGAGCTC
GAGGAGGCGTTGATAAGGATGATACTAGGAAGCAACCAAGCGGCCGCCGCCGCGGCTGCG
GCAGCTGCGGCGGAGGAGGAGGCGGCGGAGCTAGCGAGGAAGCACACGGCGGCGGTGGCG
ACGTCGCGGCAATGGTCGGCGCAGACGGAGTCGCGGATCGTGCGCGTGTCGCGGGTGTTC
GGCGGCAAGGACCGGCACAGCAAGGTGAAGACGGTGAAGGGGCTGCGCGACCGGCGGGTG
CGGCTGTCGGTGCCGACGGCGATCCAGCTGTACGACCTGCAGGACCGGCTGGGGCTCAAC
CAGCCCAGCAAGGTGGTGGACTGGCTGCTCAACGCGGCGCGCCACGAGATCGACAAGCTG
CCGCCGCTGCAGTTCCCGCCGCAGGACCACCTCTGCATGGGACACCACCACCACCTGCCG
TCGGCCATGCCGCTGATGCACCACCACGGCCACCACCACCACGCCGACGACGATAAGTAC
CACGTCGCGGCGGCGGCGGCCGCGCTGGCCGCGGAGAAGGAGGCGGCGGCGGCCGGCGGC
GGAGGAGGAGGAGGGGGAGACGACGTCGACGGCGGGGGCGGCGGCGGAGCGGCGCACATA
GTGGGGAGGTTCCCCGCCGGTGGCTACCACCGGTTCATGGGGCTGAACAACCCGCTGGGG
ATGGTCAACAGCGCCGCCGGCGCCGCCATGCCGTTCCACTACGCCGGTGAGTCATGGAAT
AATGGCAGCGTGCAAGACAGCGGCGCCGGCTCGCCGCAGGTGGCCGCCGCCGCGGCTCAC
CACACCTCGCCGTTCCCTTCACTGCTTTCCTTGGCTCCAGGGCCGCATCATCAGCTGGTG
TTCTACTCCTCCGAGGCCGAGCAGTTCACAGTAGACAACCTTGGCTCGCAGGGCTTGTCC
CTGAGCTCGGCGAGAGCTTTCCATGATCAGACAGGAAGCTAAGCAAGCTCGATCTACACA
GTACACACACTGGAACAACACTCTTCGATCGTCGACAAGGTAAGGATCGATGAGCTCTAC
CAAAAGAACAAATCTAAGCTAGCTAGTGCAAGTGTGTGCATTGCTTTGATCTATGTATTA
ATTTCTTTCAAGGGAACAATTAAGCTTGTGGGTTAAGATTTAAGAAGGAAGATACTGCCA
GCTAGCTGGCTGCTAATTTCTTTTGCTCTGAAACTAGGGCAAGAAATATGCAGGGCTTTG
CTGCATATGCCTGTGTGCAATACGGATTTGTTACTTCTTTTTATATGCAAAGAAGTAATT
GATGTATTGGCTTGTGTAATAATTAATAAGTTCTGAATTTTGAACCTTTC