Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0757400-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:31807184:31811863:1 gene:Os01g0757400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SKD1 protein, Vacuolar sorting protein4b, Vacuolar sorting protein 4b description:Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-01);Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-02)
Sequence	ATGGATTTCAAGGGGTTCTGGGAGTCCAGATTCGGGGGCAAGAAGGAGCAGGAGCCGGAG CAGAACGGGCACGCCAATGGGGTGGCGAACGGGAGCGTCAGGAAGAGGACGTCCGATTTG GCGGTCTACGAGCAGTTCGAGCAGCAGGCCAGGCAGACGGAGGTGCGCGCCGCGGCGATT CGCGATGGGAATGCTGATGCGATCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAA ATGCGTAATCTTGCAGAGACATTGTTGCGGGACATTATTCGCGGCAGTCCAGATGTGAAA TGGGAAAGCATCAAAGGACTGGAGAATGCCAAACGCCTTCTAAAAGAGGCAGTTGTCATG CCCATAAAGTATCCCAAATACTTCACTGGTCTCTTGTCACCATGGAAAGGCATTTTACTT TTTGGTCCCCCAGGAACTGGGAAGACAATGCTGGCAAAGGCTGTTGCTACTGAGTGTAAA ACTACATTCTTCAACATTTCAGCATCATCAATTGTTAGCAAATGGCGTGGGGATTCAGAG AAGCTAGTTAAAGTTCTGTTTGAGCTTGCTAGACATCATGCACCATCGACAATATTTCTT GATGAAATTGATGCTATTATCAGCCAACGTGGTGAAGCTCGCAGTGAGCATGAAGCTAGT CGACGCTTGAAGACTGAGCTACTCATTCAGATGGATGGCTTGACAAAGACGAACGACTTG GTATTTGTACTTGCAGCAACAAATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGG CTTGAGAAACGGATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAG GAACTTTTGCCATCAACTACCTCAAAGCTAGAGGTTCCATATGATACTTTAGTTGAGAAG ACTGAAGGGTACTCTGGTTCAGATATCCGTCTTGTGTGCAAAGAAGCTGCCATGCAACCA CTAAGACGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGAATTG CCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAGGAACACAAGGCCG TCTGCGCATCTCCATGCACATCGCTATGAGAAGTTTAACCAGGATTACGGAAGCCAGATC CTTAGTCAGGAGCAAGCCTGA

Peptide Sequence

PEP ID	Os01t0757400-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:31807184:31811863:1 gene:Os01g0757400 transcript:Os01t0757400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SKD1 protein, Vacuolar sorting protein4b, Vacuolar sorting protein 4b description:Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-01);Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-02)
Sequence	MDFKGFWESRFGGKKEQEPEQNGHANGVANGSVRKRTSDLAVYEQFEQQARQTEVRAAAI RDGNADAIQKPLLPSFESAEMRNLAETLLRDIIRGSPDVKWESIKGLENAKRLLKEAVVM PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWRGDSE KLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTNDL VFVLAATNLPWELDAAMLRRLEKRILVPLPEAEARHAMFEELLPSTTSKLEVPYDTLVEK TEGYSGSDIRLVCKEAAMQPLRRLMSVLEARDELVPEEELPEVGPLKPEDIEVALRNTRP SAHLHAHRYEKFNQDYGSQILSQEQA

Transcript Sequence

Transcript ID	Os01t0757400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:31807184:31811863:1 gene:Os01g0757400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SKD1 protein, Vacuolar sorting protein4b, Vacuolar sorting protein 4b description:Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-01);Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2. (Os01t0757400-02)
Sequence	GTCTCCGGGGAGACCGACCGTGCGAGATCGCGACCACGTAGTGCGGCGCTCGCTCTCGCT CTCCCCCGCGGCAGAGTCAGGCGCCGCCCGGCGAAGCGCGAGGCCCGCGGAGCAATGGAT TTCAAGGGGTTCTGGGAGTCCAGATTCGGGGGCAAGAAGGAGCAGGAGCCGGAGCAGAAC GGGCACGCCAATGGGGTGGCGAACGGGAGCGTCAGGAAGAGGACGTCCGATTTGGCGGTC TACGAGCAGTTCGAGCAGCAGGCCAGGCAGACGGAGGTGCGCGCCGCGGCGATTCGCGAT GGGAATGCTGATGCGATCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGT AATCTTGCAGAGACATTGTTGCGGGACATTATTCGCGGCAGTCCAGATGTGAAATGGGAA AGCATCAAAGGACTGGAGAATGCCAAACGCCTTCTAAAAGAGGCAGTTGTCATGCCCATA AAGTATCCCAAATACTTCACTGGTCTCTTGTCACCATGGAAAGGCATTTTACTTTTTGGT CCCCCAGGAACTGGGAAGACAATGCTGGCAAAGGCTGTTGCTACTGAGTGTAAAACTACA TTCTTCAACATTTCAGCATCATCAATTGTTAGCAAATGGCGTGGGGATTCAGAGAAGCTA GTTAAAGTTCTGTTTGAGCTTGCTAGACATCATGCACCATCGACAATATTTCTTGATGAA ATTGATGCTATTATCAGCCAACGTGGTGAAGCTCGCAGTGAGCATGAAGCTAGTCGACGC TTGAAGACTGAGCTACTCATTCAGATGGATGGCTTGACAAAGACGAACGACTTGGTATTT GTACTTGCAGCAACAAATTTACCTTGGGAACTGGACGCAGCTATGCTCCGCCGGCTTGAG AAACGGATTCTCGTACCTCTTCCTGAGGCTGAAGCAAGGCATGCTATGTTTGAGGAACTT TTGCCATCAACTACCTCAAAGCTAGAGGTTCCATATGATACTTTAGTTGAGAAGACTGAA GGGTACTCTGGTTCAGATATCCGTCTTGTGTGCAAAGAAGCTGCCATGCAACCACTAAGA CGTCTTATGTCAGTTCTTGAAGCCAGAGATGAGCTGGTGCCTGAGGAAGAATTGCCCGAG GTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAGGAACACAAGGCCGTCTGCG CATCTCCATGCACATCGCTATGAGAAGTTTAACCAGGATTACGGAAGCCAGATCCTTAGT CAGGAGCAAGCCTGAACTTCTCAAAGTTCAGACATACCATTTTCAGGACGCAACATTTTT TCTGCAGCAGTTTAAGTTGTGAGGCGAACGTTACAAACGGATGTTGCTGCTGCAGCAGTT ATGAAATAAATAGCATCATGAATATCGAACGCAATTGCCTCCTTTTATATGTGCTCCGCA TCGTCGAAGCAGAAGGCTGGATCCTATGCTGCCAGTTTTCCTTTGCACCGGCTAATACCA CTAGTATGGTACGACCAACGTCCACATGATCCATCCCATTTATAACGGACGACCAGCGAT GGAGCGCGCAAACAACATGACATCGCAAAAGCGGCCATTGGCACATAATCATTCCATTAA AGGCTGATCACACGCAGAAGTGATAATATCACACGAGAAGATGTTTTCTTCACAAATGAA CAGGCCCGGCGTGACCGATTTCCAGTTCGTTACATGCAAAATAAGATAACCAAGTGCATT CAATCACAACGAACTGGCTCAGCAGAGCCAACGCTTCGGGCAAACTCAAGGTAATCCCCT CACTGAATCGGCGGTCTTCCCAGACCTTGCATCAGACCAGGCCTTGGCTATTGTGCGCTT CATGTCTTCGTCACCTTCCTCATACATGTTCTGCAGACATAAGTAGCACAACAGTCAGAA CAGGATTTCCAGACTAATTGTTCAAGTCTGAAGTCATGACTCATCATTATGACGGGTAGG TGTTTACCTTCATCAAATCCATAATTCCAGACATTGGATCCTTCTCCTTAGCCATGCTTG GCTTGAACTGTCAGCAAATTAAAGTTAGCACATCTATATATCATTATCAGTACCAT