Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0743300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:31065153:31069986:1 gene:Os01g0743300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protease-associated PA domain containing protein. (Os01t0743300-01)
Sequence

ATGCCGCCGCCGCCCGAAGACGACGGGTCCTCCTCCGCGCGGACGCCGCTCATACCCCCC
ACACCTCCTCCTCCCGGCCGAGCGGTGGCGCGGCTCCACCCTCTCCCGCTCCTCGTTGCG
GCGGCCTTCGCCGCATCGTACCACCTCCTCGTCGCGCCCGCGCCGTCGTACTACCGCTCG
CTCTTCCTCTCCCTCGGATCCAACGACACCGCGGCAGCCCACCTCCACGCGCTCACCCTC
CGCCCCCACCTCGCGGGCACCGAGGCCAACGCCCGCGCCGCCGAGCACGTCGTCTCCGCG
CTCTCCTCCCTCTCCTTCCCCACCCGCGTCGTGCCCTACTCCGTCCTCCTCGCCTACCCG
GTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCCACGCCACCACCCCCTTTGCGCTGGTG
CAGGACACATACCCCGGTGATCCCTATGCCGCGGTCTCCGCGGAGGCCGTCCCCACCTTC
CTCGCCTACGCCGCGTCCGGCTCGGTCGCCGCCGAGGCCGTCTACGCTAACTACGGCCGC
CCGGAGGATTTCGCCTACCTCGCCGCCCGCGGCGTAGACGTCACCGGGAAGGTCGTCCTC
GCGCGCTACGGCAAGGTGTACCGCGGCGACATCGTGATAAACGCCCGGAAAGCTGGCGCG
GCGGCGGCGGTCATATACACCGATGCCAAGGACTACGCGGCGGGGGAGGCCTTCCCGGAT
GGTCCATGGATGCCGCCCACCGGTGTGCAGGTCGGGAGCACGTTCAAGGGGGTGGGGGAT
CCCACGACGCCGATGTGGGCGTCGTCCGAAGGGTGCGAGCGCGTGAGCATCCCGGAGGCG
ATGGCCACCGACGACATGCCGGGGATACCGGCGCTGCCTGTGTCGGGAAGAGATGGGGAG
GCTATACTACAGCTTATCGGCGGTGATGTCGCGCCCAAGGATTGGCAAGGCGGAGATGGC
TCGCCGGTTTACCGGCTCGGGCCCGGGCCGGCGGTGCTCAATCTCACCTACATTGGGAAC
GAGACAATGGCTACTATTCAGAATGTCATCTCAGTGATCGAAGGGAAAGAAGAACCTGAA
CGCTATATAATCCTTGGTAATCATCGTGATGCATGGACTTTTGGGGCAGTTGATCCGAAC
AGTGGAACAGCAGCCTTGCTTGAGTTAGCTCAAAGGTTCTCTGAGCTACAAAAGAAGGGT
TGGAGGCCTCGACGGACCATCATCTTGTGTAACTGGGATGCCGAAGAGTATGGACTGGTT
GGATCCACTGAATGGGTTGAAGAGAACAGGGCTATGCTAACTTCAAGAACTGTTGCTTAC
CTGAATGTTGATTCTGCAGTGTATGGTGCAGGGTTTTATGCATCAGCTACTCCTCAACTT
GATGAGTTGCTTAAGGAGGCGAGTAAACAGGTTCAAAATCCAGATAATGAGACACAAAGT
CTGTATGACTTATGGATGGCTTCTGATAGTTCTTCCATGATTAAGATTGGAAGAATAGGA
GGTGGAGGATCAGATTATTCTGCCTTTGTTCAACACATTGGTATCCCTTCAATTGACATT
TCTATGGGATCAGAATATGCGGTCTACCATAGCTTGTATGATGACTTTGTGTGGATGGAG
AAGTTCGGAGATCCCTTGTTCCGCAGGCACGTCGCAGCGGCAAGCATGTGGGGGCTTGTC
GCCCTGAGGCTTTCCGATGAGGAGATCCTACCCTTCAACTACAGCACTTATGCTGTAGAG
CTTGAGAAGGGTGCAATCGATATAAATAAGAGATTGCTGGGAGTGCCTGTCAGCTCATCT
CCCCTGCAAAAGTCAATCGCCGAGTTCAAAAGGGCAGCTCTACAAATGGATTCTGAAATG
AAGGCCTTACAGACAAGGAAAGTTTGGAACCCCTGGAGAAACAATCCCCTGAAGGTCAGA
GATCTCAATGAGCGGTTGATGATGACGGAGCGAGCATTCACCGATCGAGAAGGACTATCT
GGGAGGCCATGGTACAAACACCTGATTTATGCACCATCACTGCATGATGATTACGGAGCG
CAGGTGTATCCAGGTGTTGATGATGCCATTCAGATGGCAGAGAGGACGAATACGTCCGAA
TCCTGGCGATCTGTGCAGCATGAGATTTACAGGATTGCTAGGGTCATCAACCAGGCCTCG
CTAGTCCTAAGTGGAGGGTTAACATAA

Peptide Sequence

PEP ID

Os01t0743300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:31065153:31069986:1 gene:Os01g0743300 transcript:Os01t0743300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protease-associated PA domain containing protein. (Os01t0743300-01)
Sequence

MPPPPEDDGSSSARTPLIPPTPPPPGRAVARLHPLPLLVAAAFAASYHLLVAPAPSYYRS
LFLSLGSNDTAAAHLHALTLRPHLAGTEANARAAEHVVSALSSLSFPTRVVPYSVLLAYP
VHRSLSLSAPGHATTPFALVQDTYPGDPYAAVSAEAVPTFLAYAASGSVAAEAVYANYGR
PEDFAYLAARGVDVTGKVVLARYGKVYRGDIVINARKAGAAAAVIYTDAKDYAAGEAFPD
GPWMPPTGVQVGSTFKGVGDPTTPMWASSEGCERVSIPEAMATDDMPGIPALPVSGRDGE
AILQLIGGDVAPKDWQGGDGSPVYRLGPGPAVLNLTYIGNETMATIQNVISVIEGKEEPE
RYIILGNHRDAWTFGAVDPNSGTAALLELAQRFSELQKKGWRPRRTIILCNWDAEEYGLV
GSTEWVEENRAMLTSRTVAYLNVDSAVYGAGFYASATPQLDELLKEASKQVQNPDNETQS
LYDLWMASDSSSMIKIGRIGGGGSDYSAFVQHIGIPSIDISMGSEYAVYHSLYDDFVWME
KFGDPLFRRHVAAASMWGLVALRLSDEEILPFNYSTYAVELEKGAIDINKRLLGVPVSSS
PLQKSIAEFKRAALQMDSEMKALQTRKVWNPWRNNPLKVRDLNERLMMTERAFTDREGLS
GRPWYKHLIYAPSLHDDYGAQVYPGVDDAIQMAERTNTSESWRSVQHEIYRIARVINQAS
LVLSGGLT

Transcript Sequence

Transcript ID

Os01t0743300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:31065153:31069986:1 gene:Os01g0743300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protease-associated PA domain containing protein. (Os01t0743300-01)
Sequence

GCTCGGCGTCTCCATCCACCCTGGTGGTAGTCAAGCACTCAAGCTAGTGTAACGGCGAGT
CTACCGCCGCGTTGCCCGACGCGGCCATGCCGCCGCCGCCCGAAGACGACGGGTCCTCCT
CCGCGCGGACGCCGCTCATACCCCCCACACCTCCTCCTCCCGGCCGAGCGGTGGCGCGGC
TCCACCCTCTCCCGCTCCTCGTTGCGGCGGCCTTCGCCGCATCGTACCACCTCCTCGTCG
CGCCCGCGCCGTCGTACTACCGCTCGCTCTTCCTCTCCCTCGGATCCAACGACACCGCGG
CAGCCCACCTCCACGCGCTCACCCTCCGCCCCCACCTCGCGGGCACCGAGGCCAACGCCC
GCGCCGCCGAGCACGTCGTCTCCGCGCTCTCCTCCCTCTCCTTCCCCACCCGCGTCGTGC
CCTACTCCGTCCTCCTCGCCTACCCGGTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCC
ACGCCACCACCCCCTTTGCGCTGGTGCAGGACACATACCCCGGTGATCCCTATGCCGCGG
TCTCCGCGGAGGCCGTCCCCACCTTCCTCGCCTACGCCGCGTCCGGCTCGGTCGCCGCCG
AGGCCGTCTACGCTAACTACGGCCGCCCGGAGGATTTCGCCTACCTCGCCGCCCGCGGCG
TAGACGTCACCGGGAAGGTCGTCCTCGCGCGCTACGGCAAGGTGTACCGCGGCGACATCG
TGATAAACGCCCGGAAAGCTGGCGCGGCGGCGGCGGTCATATACACCGATGCCAAGGACT
ACGCGGCGGGGGAGGCCTTCCCGGATGGTCCATGGATGCCGCCCACCGGTGTGCAGGTCG
GGAGCACGTTCAAGGGGGTGGGGGATCCCACGACGCCGATGTGGGCGTCGTCCGAAGGGT
GCGAGCGCGTGAGCATCCCGGAGGCGATGGCCACCGACGACATGCCGGGGATACCGGCGC
TGCCTGTGTCGGGAAGAGATGGGGAGGCTATACTACAGCTTATCGGCGGTGATGTCGCGC
CCAAGGATTGGCAAGGCGGAGATGGCTCGCCGGTTTACCGGCTCGGGCCCGGGCCGGCGG
TGCTCAATCTCACCTACATTGGGAACGAGACAATGGCTACTATTCAGAATGTCATCTCAG
TGATCGAAGGGAAAGAAGAACCTGAACGCTATATAATCCTTGGTAATCATCGTGATGCAT
GGACTTTTGGGGCAGTTGATCCGAACAGTGGAACAGCAGCCTTGCTTGAGTTAGCTCAAA
GGTTCTCTGAGCTACAAAAGAAGGGTTGGAGGCCTCGACGGACCATCATCTTGTGTAACT
GGGATGCCGAAGAGTATGGACTGGTTGGATCCACTGAATGGGTTGAAGAGAACAGGGCTA
TGCTAACTTCAAGAACTGTTGCTTACCTGAATGTTGATTCTGCAGTGTATGGTGCAGGGT
TTTATGCATCAGCTACTCCTCAACTTGATGAGTTGCTTAAGGAGGCGAGTAAACAGGTTC
AAAATCCAGATAATGAGACACAAAGTCTGTATGACTTATGGATGGCTTCTGATAGTTCTT
CCATGATTAAGATTGGAAGAATAGGAGGTGGAGGATCAGATTATTCTGCCTTTGTTCAAC
ACATTGGTATCCCTTCAATTGACATTTCTATGGGATCAGAATATGCGGTCTACCATAGCT
TGTATGATGACTTTGTGTGGATGGAGAAGTTCGGAGATCCCTTGTTCCGCAGGCACGTCG
CAGCGGCAAGCATGTGGGGGCTTGTCGCCCTGAGGCTTTCCGATGAGGAGATCCTACCCT
TCAACTACAGCACTTATGCTGTAGAGCTTGAGAAGGGTGCAATCGATATAAATAAGAGAT
TGCTGGGAGTGCCTGTCAGCTCATCTCCCCTGCAAAAGTCAATCGCCGAGTTCAAAAGGG
CAGCTCTACAAATGGATTCTGAAATGAAGGCCTTACAGACAAGGAAAGTTTGGAACCCCT
GGAGAAACAATCCCCTGAAGGTCAGAGATCTCAATGAGCGGTTGATGATGACGGAGCGAG
CATTCACCGATCGAGAAGGACTATCTGGGAGGCCATGGTACAAACACCTGATTTATGCAC
CATCACTGCATGATGATTACGGAGCGCAGGTGTATCCAGGTGTTGATGATGCCATTCAGA
TGGCAGAGAGGACGAATACGTCCGAATCCTGGCGATCTGTGCAGCATGAGATTTACAGGA
TTGCTAGGGTCATCAACCAGGCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAACAACTG
TTGGGGAAGCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACT
GCGATAAATGAAATGTTCATGTCACTTATTTGGAACAAAAAAAAGGAAGAAAAATAGAGG
AATTTGTGGGTTTTAAATCCAAAGAGCGAAGGGTGAAGAGCAAAGCTTTGGAAAGTAAAC
TGTATCAAAATAGGACTCGAGGGAATAAAGGGTACATGTACCTTTGATAGCT