Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0743200-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:31055619:31058475:-1 gene:Os01g0743200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 5 description:Pectin lyase fold/virulence factor domain containing protein. (Os01t0743200-01);Similar to Pectinesterase. (Os01t0743200-02)
Sequence	ATGGCCGTGGCGCCCGTCCGGCTCGTGGCGTGCATTGTCGCCCTGGCCGCCGTGGCGCCG GGCGGAGTGGCGGGGCACACACGGGGCGTGCGGCCAGGGAGGGCGGCGGGGAAGCAGCAG CCGTCGTTCCCGGAGAACGCGACGCGGGTGGAGGCGATCGAGCGGCAGTTCATGGAGTGG GTACGGTACATGGGCGGGCTGGAGCACAGCACGGTCCACCACGCGCTCGCCCGGGCGTTC CCCTCCTACTCGCTCGTCGTCGACAAGAACCCGGCGTTCGGCGACTTCACCACCATCCAG GCCGCCGTCGACTCGCTCCCGATCATCAACCTCGTCCGCGTCGTCATCAAGGTCAACGCC GGCACCTACACGGAGAAGGTGAACATATCGCCGATGCGCGCGTTCATCACCCTCGAGGGC GCCGGCGCCGACAAGACGATCGTGCAGTGGGGTGACACCGCGGACAGTCCGTCCGGCCGG GCGGGACGGCCGCTCGGCACATACAGCTCCGCGTCGTTCGCCGTGAACGCGCAGTACTTC CTCGCCAGGAACATCACTTTCAAGAACACGTCGCCGGTGCCGAAGCCGGGGGCGTCGGGG AAGCAGGCGGTGGCGCTGCGGGTGTCGGCGGACAACGCGGCGTTCGTGGGGTGCAGGTTC CTGGGCGCGCAGGACACGCTGTACGATCACTCGGGCCGGCACTACTACAAGGAATGCTAC ATCGAAGGCTCCGTGGATTTCATCTTTGGCAATGCGCTCTCTCTGTTTGAGGATTGCCAC GTGCATGCGATCGCGCGGGACTACGGCGCGCTGACAGCGCAGAACCGGCAGAGCATGCTG GAGGACACGGGGTTCTCGTTCGTCAACTGCCGGGTGACGGGATCCGGCGCGCTCTACCTC GGCCGCGCCTGGGGCACCTTCTCCCGCGTCGTCTTCGCCTACACCTACATGGACGACATC ATCATCCCCCGTGGCTGGTACAACTGGGGCGACCCCAACCGCGAGCTGACGGTGTTCTAC GGGCAGTACAAGTGCACGGGCCCCGGCGCGAGCTTCTCCGGCAGGGTGTCGTGGTCACGC GAGCTCACCGACGAGGAGGCCAAGCCCTTCATCTCGCTCACCTTCATCGACGGCACGGAA TGGGTCAGGTTGTGA

Peptide Sequence

PEP ID	Os01t0743200-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:31055619:31058475:-1 gene:Os01g0743200 transcript:Os01t0743200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 5 description:Pectin lyase fold/virulence factor domain containing protein. (Os01t0743200-01);Similar to Pectinesterase. (Os01t0743200-02)
Sequence	MAVAPVRLVACIVALAAVAPGGVAGHTRGVRPGRAAGKQQPSFPENATRVEAIERQFMEW VRYMGGLEHSTVHHALARAFPSYSLVVDKNPAFGDFTTIQAAVDSLPIINLVRVVIKVNA GTYTEKVNISPMRAFITLEGAGADKTIVQWGDTADSPSGRAGRPLGTYSSASFAVNAQYF LARNITFKNTSPVPKPGASGKQAVALRVSADNAAFVGCRFLGAQDTLYDHSGRHYYKECY IEGSVDFIFGNALSLFEDCHVHAIARDYGALTAQNRQSMLEDTGFSFVNCRVTGSGALYL GRAWGTFSRVVFAYTYMDDIIIPRGWYNWGDPNRELTVFYGQYKCTGPGASFSGRVSWSR ELTDEEAKPFISLTFIDGTEWVRL

Transcript Sequence

Transcript ID	Os01t0743200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:31055619:31058475:-1 gene:Os01g0743200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 5 description:Pectin lyase fold/virulence factor domain containing protein. (Os01t0743200-01);Similar to Pectinesterase. (Os01t0743200-02)
Sequence	ACCGAACCCGCCCGGCCGCCACACACGCCTCTCTAGCTACCCGGCGCCCGTTCGAGTAGC CTGTAGGCGCGTGGCGTCGTAATGGCCGTGGCGCCCGTCCGGCTCGTGGCGTGCATTGTC GCCCTGGCCGCCGTGGCGCCGGGCGGAGTGGCGGGGCACACACGGGGCGTGCGGCCAGGG AGGGCGGCGGGGAAGCAGCAGCCGTCGTTCCCGGAGAACGCGACGCGGGTGGAGGCGATC GAGCGGCAGTTCATGGAGTGGGTACGGTACATGGGCGGGCTGGAGCACAGCACGGTCCAC CACGCGCTCGCCCGGGCGTTCCCCTCCTACTCGCTCGTCGTCGACAAGAACCCGGCGTTC GGCGACTTCACCACCATCCAGGCCGCCGTCGACTCGCTCCCGATCATCAACCTCGTCCGC GTCGTCATCAAGGTCAACGCCGGCACCTACACGGAGAAGGTGAACATATCGCCGATGCGC GCGTTCATCACCCTCGAGGGCGCCGGCGCCGACAAGACGATCGTGCAGTGGGGTGACACC GCGGACAGTCCGTCCGGCCGGGCGGGACGGCCGCTCGGCACATACAGCTCCGCGTCGTTC GCCGTGAACGCGCAGTACTTCCTCGCCAGGAACATCACTTTCAAGAACACGTCGCCGGTG CCGAAGCCGGGGGCGTCGGGGAAGCAGGCGGTGGCGCTGCGGGTGTCGGCGGACAACGCG GCGTTCGTGGGGTGCAGGTTCCTGGGCGCGCAGGACACGCTGTACGATCACTCGGGCCGG CACTACTACAAGGAATGCTACATCGAAGGCTCCGTGGATTTCATCTTTGGCAATGCGCTC TCTCTGTTTGAGGATTGCCACGTGCATGCGATCGCGCGGGACTACGGCGCGCTGACAGCG CAGAACCGGCAGAGCATGCTGGAGGACACGGGGTTCTCGTTCGTCAACTGCCGGGTGACG GGATCCGGCGCGCTCTACCTCGGCCGCGCCTGGGGCACCTTCTCCCGCGTCGTCTTCGCC TACACCTACATGGACGACATCATCATCCCCCGTGGCTGGTACAACTGGGGCGACCCCAAC CGCGAGCTGACGGTGTTCTACGGGCAGTACAAGTGCACGGGCCCCGGCGCGAGCTTCTCC GGCAGGGTGTCGTGGTCACGCGAGCTCACCGACGAGGAGGCCAAGCCCTTCATCTCGCTC ACCTTCATCGACGGCACGGAATGGGTCAGGTTGTGAGAGATCGATCCATCGGTCGATCGA GTTCATTGTAGCACACCGCACACGGCATCATAGCGTCACACGATGTAAAAAGAAAAACAG ACGAATATATATACAGATTCATTTGC