Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0741900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:30975765:30979337:1 gene:Os01g0741900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA6 description:Auxin-responsive protein, Drought tolerance, Control of tiller outgrowth (Os01t0741900-01)
Sequence

ATGGAAGAAGGGTCCAACAAAAGAGAAGGACTTCCTCCTCAACTCCTAGATCTCATCCCA
GATGAGAAGGAATGGAAGCTGAGAGAAGCATTAGGTCTAGGGAGATCAAGAAACGCAGGC
TTCGACGGTGAAGAAGACAAGAAGCTAGACCTAAAGCTTGGTCTTCCTGGTTTTATAGAA
GATGATGAGGCAGAAACCTTAAGAGATTACAGGCTACAGCAAGAGAGCCCATCTCTCTCC
CTTAGTTTCTTTCCAAAGCACTCCAAGACCACCAGCAGCACTACTACGACAACTGGAGCA
AAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGGTTATAACGACCAGAAGCAG
CAGGCAAGGGCAGGATGTGGGAAGGAACTTGCAGTGGAGGAAATGATAGCAGCCGTGAGT
GAGAGGAAGAAAGGATGCTGCCCCCCACCACCACCACCACATGGTGCTCCTGCTACACCT
GCGCGCAACAGACCACAGACCCAGGGAAGAGGAGCTGCAGCACCAGTGGTTGGTTGGCCT
CCAATTCGATCCTTCAGGAGAAACCTTGCTAGTAGTAGTTCATCCAAACATTCCCCTGAA
CCACAAAATGATAATGCCAATGCAAAGGTGACGCTCACCTGCAAGAAAAACCCTCTTGTA
AAAATCAACATGGATGGGATCCCTATTGGAAGGAAAATAGACCTTGCAGCCTATAACAGC
TATGATGGGCTATCGTCAGCTGTCAAACAACTCTTCCATGGGTTTCTTCAAGCTCAAAAG
GACCAAACTAATGCGCAAATTGCACAGCAAGGTGCAGATGACAAAATATTTTATCAATTG
TTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTG
GTTGGGGACGTGCCATGGAAAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGG
AGTTCAGAGCTTTCCCATACCCTGATTGGAGCTACTGCTAGGGTCTAG

Peptide Sequence

PEP ID

Os01t0741900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:30975765:30979337:1 gene:Os01g0741900 transcript:Os01t0741900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA6 description:Auxin-responsive protein, Drought tolerance, Control of tiller outgrowth (Os01t0741900-01)
Sequence

MEEGSNKREGLPPQLLDLIPDEKEWKLREALGLGRSRNAGFDGEEDKKLDLKLGLPGFIE
DDEAETLRDYRLQQESPSLSLSFFPKHSKTTSSTTTTTGAKRGFIDTVEDKTEGYNDQKQ
QARAGCGKELAVEEMIAAVSERKKGCCPPPPPPHGAPATPARNRPQTQGRGAAAPVVGWP
PIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNS
YDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRML
VGDVPWKVFVSTAKRLRVLRSSELSHTLIGATARV

Transcript Sequence

Transcript ID

Os01t0741900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:30975765:30979337:1 gene:Os01g0741900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA6 description:Auxin-responsive protein, Drought tolerance, Control of tiller outgrowth (Os01t0741900-01)
Sequence

GCTAATCTTCCAGCCACACACCTAGTCAGTCATCAAAGTGTGCGTGCTTCTCCAGAACAG
TGAGAGAGAGAGGGGCAAAGGGAGGCAGGATAAAAAGCCGAGCTGTAGGGGACTAAAGAA
GAAAGAAAAGCATAGAAAAGAACGGCAAGCAAGCAGCTCGAGGCACCCGCGCTAGTACAT
AAAGCCACCGAGGTGCGATTTCGCGAGCTCTAGCCGCTTCCACTTGGCCATTTCCCATCT
GCCTCCTGGAGCTTTAGCTCTAACTCTAGTTCTAGCTCTAGCTCCGGCTACGTTTGCAAC
TGTTGTTTATCTCCTGGTGAGTCCTCCTGTCATGTTAGCCGTAGATTTTGGCCGGAGCAC
AAGGTGTTTTTGTTGCTTGCTGATTTTACAGGTTGCAGGTTGTTCTTCTCTTTCCTGAAA
TGGTTTTGACAAAAGAGCTGTTTTGATCTGGGGCTGCCTCAATCATTTGCTTCTATGGCA
GGCTATACACCACACTTTTAAGATGTTTTAGCCTCATTGGTATTGTTTATGTTTCATTAT
GAGTTATTACGAAAGACTTTAATTAAAACAAACGTCTAGGGTGCTGCTTGTTGCACAAAT
GAGTTATTCGTTCCGCTTTCAATTTTTCATTGCCAGAACCTGATCTTAACTCCGTGTTTT
TCCGCGTTCTCTTTCGTTCTCGCTTAGACCTCAGCTTACGCTTCGGGCTGGTTTGGTGCT
TTTCTCCAGCCTAAGTTGAGTGTAGAACTAAACTTTTTAAGGAGTTGGTTGAACTCCTCT
CATTGCCTTCAAACTCTTCCTACTATTCTAGGTGGATAGCATTTAGACTCTTGAAGACTT
TGAGCTAGTTAACCTTATGGAAGAAGGGTCCAACAAAAGAGAAGGACTTCCTCCTCAACT
CCTAGATCTCATCCCAGATGAGAAGGAATGGAAGCTGAGAGAAGCATTAGGTCTAGGGAG
ATCAAGAAACGCAGGCTTCGACGGTGAAGAAGACAAGAAGCTAGACCTAAAGCTTGGTCT
TCCTGGTTTTATAGAAGATGATGAGGCAGAAACCTTAAGAGATTACAGGCTACAGCAAGA
GAGCCCATCTCTCTCCCTTAGTTTCTTTCCAAAGCACTCCAAGACCACCAGCAGCACTAC
TACGACAACTGGAGCAAAGAGGGGATTCATAGACACAGTTGAGGACAAAACAGAAGGTTA
TAACGACCAGAAGCAGCAGGCAAGGGCAGGATGTGGGAAGGAACTTGCAGTGGAGGAAAT
GATAGCAGCCGTGAGTGAGAGGAAGAAAGGATGCTGCCCCCCACCACCACCACCACATGG
TGCTCCTGCTACACCTGCGCGCAACAGACCACAGACCCAGGGAAGAGGAGCTGCAGCACC
AGTGGTTGGTTGGCCTCCAATTCGATCCTTCAGGAGAAACCTTGCTAGTAGTAGTTCATC
CAAACATTCCCCTGAACCACAAAATGATAATGCCAATGCAAAGGTGACGCTCACCTGCAA
GAAAAACCCTCTTGTAAAAATCAACATGGATGGGATCCCTATTGGAAGGAAAATAGACCT
TGCAGCCTATAACAGCTATGATGGGCTATCGTCAGCTGTCAAACAACTCTTCCATGGGTT
TCTTCAAGCTCAAAAGGACCAAACTAATGCGCAAATTGCACAGCAAGGTGCAGATGACAA
AATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGA
AGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAAGTATTTGTCTCAACTGCTAAAAG
GCTGAGGGTTCTAAGGAGTTCAGAGCTTTCCCATACCCTGATTGGAGCTACTGCTAGGGT
CTAGCCGTCTAGGAGAGTCACCAATTGCTGAAATGCTGGGATCTTATTAACCATTCGGAA
TGAATGTGTGCACTCAAGCCAGTCCATTCTCCATTTTAGGACTACCCCTATTTTGCCTAT
ATAGATGATCTACTGAGATGAGTTGGCATACAGCAAATGCAAGGAAATGGCAATCTGTTT
TGTAAATTAGGTTACCTTGCTATGACATGTTGCTTAATTCAATTCGAAGCGATTTTGGTT
TTATCGGGGAGAGCCGCATATGTAGACTTGCAGGTCACCCATGTAAAGTGCCTTGTTCTG
CGTGATAAATTTGTATTAATCGCTGCTGCAACCCGACATGCAGATCTAATG