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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0730800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:30488192:30490382:1 gene:Os01g0730800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mpv17/PMP22 family protein. (Os01t0730800-01);Similar to peroxisomal membrane protein 2. (Os01t0730800-02)
Sequence

ATGAAGGCCATCGGTAGCGGCGGCGAGTGGTGGTGGAACCTCCCGTCCCTCCGCCGCAAG
CCCGACCGGCGCCGCCGCGGCCGGCGGAACACGGACCCGCGCGGCCGGCGCCGCGGTCCC
CCACCGGAGCCGCTGTCGTCGTCGTCGTCGGAGTCCATCGGCCAAAGCCGCGGCTGGCCC
ATCGACTTCCCGTTCACGCAGGCCGTGACCGCCGCCTCTCTCACGCTTACGGGTGACACC
ATCGCGCAGGTCCGCCAGCGCATCGTCGACCGCCGCCTCCGCGGCCCCGAACCAGACAGC
AAGGGTTTGGTACCGGACTTGTTGATGAGCCATGATTGGCTACGCGCGCTTCGTATGGCT
TCATATGGATTTCTTCTTTATGGTCCGGGATCGCACGCATGGTACCAGTTCCTTGATCAG
TGTATGCCGAAGCCAACATTTGCAAATCTATCCACTAAGGTCATACTGAACCAGATTGCG
CTTGGTCCTTGTGTTATTGGTGTAATTTTTGCCTGGAATAACTTATGGATAGGGAAACTG
TCAGAACTTCCATCTAAATATCGGAATGATGCCCTTCCTACACTTCTTTTTGGGTTTAGA
TTTTGGATTCCTGTATCGATCATTAACTTTTGGATGGTTCCTTTGTCTGCTCGTGTTGCC
TTCATGTCCTCTTGTGCCATTTTTTGGAACTTCTACCTGTCAACCACTATGAGCAAGTGA

Peptide Sequence

PEP ID

Os01t0730800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:30488192:30490382:1 gene:Os01g0730800 transcript:Os01t0730800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mpv17/PMP22 family protein. (Os01t0730800-01);Similar to peroxisomal membrane protein 2. (Os01t0730800-02)
Sequence

MKAIGSGGEWWWNLPSLRRKPDRRRRGRRNTDPRGRRRGPPPEPLSSSSSESIGQSRGWP
IDFPFTQAVTAASLTLTGDTIAQVRQRIVDRRLRGPEPDSKGLVPDLLMSHDWLRALRMA
SYGFLLYGPGSHAWYQFLDQCMPKPTFANLSTKVILNQIALGPCVIGVIFAWNNLWIGKL
SELPSKYRNDALPTLLFGFRFWIPVSIINFWMVPLSARVAFMSSCAIFWNFYLSTTMSK

Transcript Sequence

Transcript ID

Os01t0730800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:30488192:30490382:1 gene:Os01g0730800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mpv17/PMP22 family protein. (Os01t0730800-01);Similar to peroxisomal membrane protein 2. (Os01t0730800-02)
Sequence

GTGCCGCAACGCCTCACGAACTCCGCGCGCTTCCCCTCCTCGCCGCCGCCGCCGCGGCGT
GGGAGAATGAAGGCCATCGGTAGCGGCGGCGAGTGGTGGTGGAACCTCCCGTCCCTCCGC
CGCAAGCCCGACCGGCGCCGCCGCGGCCGGCGGAACACGGACCCGCGCGGCCGGCGCCGC
GGTCCCCCACCGGAGCCGCTGTCGTCGTCGTCGTCGGAGTCCATCGGCCAAAGCCGCGGC
TGGCCCATCGACTTCCCGTTCACGCAGGCCGTGACCGCCGCCTCTCTCACGCTTACGGGT
GACACCATCGCGCAGGTCCGCCAGCGCATCGTCGACCGCCGCCTCCGCGGCCCCGAACCA
GACAGCAAGGGTTTGGTACCGGACTTGTTGATGAGCCATGATTGGCTACGCGCGCTTCGT
ATGGCTTCATATGGATTTCTTCTTTATGGTCCGGGATCGCACGCATGGTACCAGTTCCTT
GATCAGTGTATGCCGAAGCCAACATTTGCAAATCTATCCACTAAGGTCATACTGAACCAG
ATTGCGCTTGGTCCTTGTGTTATTGGTGTAATTTTTGCCTGGAATAACTTATGGATAGGG
AAACTGTCAGAACTTCCATCTAAATATCGGAATGATGCCCTTCCTACACTTCTTTTTGGG
TTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTGGATGGTTCCTTTGTCTGCTCGT
GTTGCCTTCATGTCCTCTTGTGCCATTTTTTGGAACTTCTACCTGTCAACCACTATGAGC
AAGTGAAACCTCTAGTATACCTTCAGGGCATGTACAAGCCTCATTTGTCATGATACATGT
GGTTCCGTAGCAAATGTTTTGCTTGGGTTATTGTGGGACTAAATGAACTGCTACGGATGA
GGGTTTGAAGGAGCTAATTTTTGCTCTGGTGGTAGAGTACATGGTAGAGTCACCTCACCT
CCTGTGGACAATTCTGTCGCCTGCCTCGTCATTGACGGAATTCTGGTAGTGGTCTCGAGG
ACAAAGTCGATGGAGAAAGAAATTGTGTTTCTCTAAACATGTGTGAGCCATCTACCATCT
ACCTCTAATTTGATAGGAAAGATGCTTGTAATTTTGATCATTTGTTCAATAAGCTAAACT
TGTATGCAAGT