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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0728150-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:30364320:30365422:-1 gene:Os01g0728150 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HVA22F (HVA22-LIKE PROTEIN F). (Os01t0728150-00)
Sequence

ATGCCTTCCTTCTGCTACTTTAATCCCATATTTAAAATCCACTGCAGAAGTATAAAACCA
TCTAGCCTATCGCTCGCTATCTACACCTTAGTACAACGGCTCATCGAGGACATCGAGAAA
ATTCAGAACAAAGCTCTTCACCGATCGCAACAGCGGATCATGGGTGTTCTAGGTGCCCTT
GCTAGGCACATGGATGCCCTTGTTGGGCCAGGAATCATGCTGCTCTACCCTCTATACGCG
TCGATGCGTGCGATAGAGAGCCCTTCTACCCTGGATGATCAGCAATGGCTCACCTACTGG
GTCCTCTACTCCCTGATCACCCTCTTTGAGCTCTCATGCTGGAAAGTTCTCCAATGGTTT
CCTCTGTGGCCGTACATGAAGCTCCTCTTCTGCTGTTGGCTGGTGCTGCCAATCTTCAAC
GGCGCGGCCTACATCTACGAGACCCACGTGCGCCGCTACTTCAAGATCGGCCAGTACGTG
AGCCCCAACTACAACGAACGGCAGCGGAAGGCGCTCCAGATGATGAGCCTCGACGCGCGC
AAGTCCGTCGAACGATTCATCGAGTCGCACGGCCCTGACGCCCTCGACAAGATCATCCGA
GCTGTGAGTGATTCTTCAGAGTTCAGACCAGCCGGTTGCTGCATGCATCTGCAGGCTTTG
GAATGTCTGTTTCATTTTCTGAATTCTGATGCCATGTCTGGTTTTTTGTGCTTTGCAGGC
TGA

Peptide Sequence

PEP ID

Os01t0728150-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:30364320:30365422:-1 gene:Os01g0728150 transcript:Os01t0728150-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HVA22F (HVA22-LIKE PROTEIN F). (Os01t0728150-00)
Sequence

MPSFCYFNPIFKIHCRSIKPSSLSLAIYTLVQRLIEDIEKIQNKALHRSQQRIMGVLGAL
ARHMDALVGPGIMLLYPLYASMRAIESPSTLDDQQWLTYWVLYSLITLFELSCWKVLQWF
PLWPYMKLLFCCWLVLPIFNGAAYIYETHVRRYFKIGQYVSPNYNERQRKALQMMSLDAR
KSVERFIESHGPDALDKIIRAVSDSSEFRPAGCCMHLQALECLFHFLNSDAMSGFLCFAG

Transcript Sequence

Transcript ID

Os01t0728150-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:30364320:30365422:-1 gene:Os01g0728150 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HVA22F (HVA22-LIKE PROTEIN F). (Os01t0728150-00)
Sequence

ATGCCTTCCTTCTGCTACTTTAATCCCATATTTAAAATCCACTGCAGAAGTATAAAACCA
TCTAGCCTATCGCTCGCTATCTACACCTTAGTACAACGGCTCATCGAGGACATCGAGAAA
ATTCAGAACAAAGCTCTTCACCGATCGCAACAGCGGATCATGGGTGTTCTAGGTGCCCTT
GCTAGGCACATGGATGCCCTTGTTGGGCCAGGAATCATGCTGCTCTACCCTCTATACGCG
TCGATGCGTGCGATAGAGAGCCCTTCTACCCTGGATGATCAGCAATGGCTCACCTACTGG
GTCCTCTACTCCCTGATCACCCTCTTTGAGCTCTCATGCTGGAAAGTTCTCCAATGGTTT
CCTCTGTGGCCGTACATGAAGCTCCTCTTCTGCTGTTGGCTGGTGCTGCCAATCTTCAAC
GGCGCGGCCTACATCTACGAGACCCACGTGCGCCGCTACTTCAAGATCGGCCAGTACGTG
AGCCCCAACTACAACGAACGGCAGCGGAAGGCGCTCCAGATGATGAGCCTCGACGCGCGC
AAGTCCGTCGAACGATTCATCGAGTCGCACGGCCCTGACGCCCTCGACAAGATCATCCGA
GCTGTGAGTGATTCTTCAGAGTTCAGACCAGCCGGTTGCTGCATGCATCTGCAGGCTTTG
GAATGTCTGTTTCATTTTCTGAATTCTGATGCCATGTCTGGTTTTTTGTGCTTTGCAGGC
TGA