Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0725900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:30263383:30264381:-1 gene:Os01g0725900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to arabinogalactan protein. (Os01t0725900-01)
Sequence

CAAACAACAATGGCTAGGTTCGCGGGATCCCTTCAGCTGTACTGCCTCTCCGTCCTGCTC
GTGATCCTCACCCAGCTTGGAGGAGGCTCTGCCATGGGGCTCCCCCGGCCGCCACCCAAC
GTGAACTTCACCATCGGCGTCGAGGGCGCTGTCTGGTGCAAGACCTGCCGCTACGCCGGC
TACGTCAAGTCCAAGGACGCCTCGCCCCTCCCAAATGCGGCGGCGCTGCTGCGGTGCAGG
CGGGGGAAGTGGGCGCTGTCGGTGTGGGGCGCGACGGACGCGCGCGGCTACTTCCTGATC
CAGACGGGGACGCAGGTGGCGGCGTTCACGAGCAAGGACTGCAGGGTGTACGTGCCGCGG
TCGCCGTCGCGTGCGGCGTGCGGCGTGGCGCTCCAGCCTGGGCGGAAGACGGGTTCGCCG
CTCAAGTTCCGCAGGTTCGTGGCGCTCCCCGACGGGCTGCAAGGGCGCTACTCCGCCGGC
AACTTCGTCTTCGGCCCGCGAGACCCCAAGAAATGCTGA

Peptide Sequence

PEP ID

Os01t0725900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:30263383:30264381:-1 gene:Os01g0725900 transcript:Os01t0725900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to arabinogalactan protein. (Os01t0725900-01)
Sequence

QTTMARFAGSLQLYCLSVLLVILTQLGGGSAMGLPRPPPNVNFTIGVEGAVWCKTCRYAG
YVKSKDASPLPNAAALLRCRRGKWALSVWGATDARGYFLIQTGTQVAAFTSKDCRVYVPR
SPSRAACGVALQPGRKTGSPLKFRRFVALPDGLQGRYSAGNFVFGPRDPKKC

Transcript Sequence

Transcript ID

Os01t0725900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:30263383:30264381:-1 gene:Os01g0725900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to arabinogalactan protein. (Os01t0725900-01)
Sequence

ATCATTGCGACGTACTAATTTAATATAAGTATAGAGCTTCATCATTTGACAAACAACAAT
GGCTAGGTTCGCGGGATCCCTTCAGCTGTACTGCCTCTCCGTCCTGCTCGTGATCCTCAC
CCAGCTTGGAGGAGGCTCTGCCATGGGGCTCCCCCGGCCGCCACCCAACGTGAACTTCAC
CATCGGCGTCGAGGGCGCTGTCTGGTGCAAGACCTGCCGCTACGCCGGCTACGTCAAGTC
CAAGGACGCCTCGCCCCTCCCAAATGCGGCGGCGCTGCTGCGGTGCAGGCGGGGGAAGTG
GGCGCTGTCGGTGTGGGGCGCGACGGACGCGCGCGGCTACTTCCTGATCCAGACGGGGAC
GCAGGTGGCGGCGTTCACGAGCAAGGACTGCAGGGTGTACGTGCCGCGGTCGCCGTCGCG
TGCGGCGTGCGGCGTGGCGCTCCAGCCTGGGCGGAAGACGGGTTCGCCGCTCAAGTTCCG
CAGGTTCGTGGCGCTCCCCGACGGGCTGCAAGGGCGCTACTCCGCCGGCAACTTCGTCTT
CGGCCCGCGAGACCCCAAGAAATGCTGACTTTCTGATTAGCGGTAACGTGTTTGGGACTT
TGGGGCTGGGGGTGGTGTGGCTGTGCACTTCGAATTCTACAACTTGGTCACAGTTTGTGT
GTGGCGTGTGCCCGGTGGATCGACGTGGACGTGCATTTCCGCATCCAGCAAATAATGATG
ATAAAAAAGTGTTGGACGTAGCCCCAGACCTAGTGTGTTGTGTTTAGTTCCTTTCAAACT
TTCAAAAATTTCATCGTATCAAATGTTTCAATATATGCAGGGAACATTAAATGTGTACGA
AAATAACCAATGTGGTTCTTAAAAAGAAATAAGGGAAACGATCAATTGAAAGGGC