Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0723000-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:30143647:30146827:-1 gene:Os01g0723000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Elongation factor EF-2 (Fragment). (Os01t0723000-01)
Sequence	ATGGTGAGGTTTACGGCGGAGGAGCTCCGCGCGAGCATGGATAAGAAGGACAACATCCGG AACATGTCTGTGATCGCGCACGTTGATCATGGGAAGTCGACGCTCACTGACTCGCTGGTG GCGGCGGCCGGCATCATCGCGCAGGACGTGGCCGGCGACGTGCGGATGACGGACACGCGC GCGGACGAGGCCGAGCGCGGCATCACCATCAAGTCGACGGGGATATCCCTCTACTACGAG ATGACGGACGCGGCGCTCAGGAGCTTCGAGGGCAAGCGCGACGGCAACTCGTACCTCATC AACCTCATCGACTCGCCCGGGCACATCGACTTCTCGTCCGAGGTGACGGCCGCGCTCCGC ATCACCGACGGCGCCCTCGTCGTCGTCGACTGCATCGAGGGCGTCTGCGTCCAGACCGAG ACCGTGCTCCGCCAGTCGCTCGCCGAGCGGATCAAGCCCGTCCTCACCGTCAACAAGATG GACCGCTGCTTCCTTGAGCTGCAGCAATCCGGTGAGGAGGCGTACCAGGCGTTCTCCCGC GTGATCGAGAGCGTGAACGTCACCATGGCGCCCTACGAGGACAAGAATCTCGGCGACTGC ATGGTGGCTCCGGAGAAGGGCACGGTGGCGTTTTCGGCCGGCCTGCACGGCTGGGCCTTC ACCCTGTCCAACTTCGCCAAGATGTACAAGGCCAAGTTCAAGGTGGACGAGGCCAAGATG ATGGAGCGGCTTTGGGGCGAGAACTACTTCGACCATACCACCAAGAAGTGGACGACGACC GCACCATCGACGTCGTCCAAGACGTGCCAGCGCGGGTTCGTGCAGTTCTGCTACGAGCCG ATCCGCCGGATCATCTCGGCGTGCATGAACGACGACAAGGAGAATCTGTGGGACATGCTG ACGAAGCTCAAGATCACGCTCAAGGCTGAGGAGAAGGAGCTGACCGGCAAAAAGCTGATG AAGCGCGTCATGCAGGCGTGGCTCCCGGCCAGCGACGCGCTCCTCGAGATGATCGTCTTC CACCTGCCTTCCCCAGCCAAGGCGCAGCAGTACCGCGTCGACACCCTCTACGACGGGCCC CTCGACGACCCCTACGCCACCGCCATTCGCAACTGCGACCCCAAGGGACCCCTCATGGTG TACGTGTCCAAGATGATCCCGGCGAGCGACAAGGGGAGGTTCTTCGCCTTCGGCCGCGTC TTCTCCGGCACAGTGGCCACCGGCAACAAGGTGCGGATCATGGGCCCCAACTTCGTGCCC GGCGAGAAGAAGGACCTGTACGTCAAGACGGTGCAGCGCACGGTGATCTGGATGGGCAAG AAGCAGGAGTCCGTGGACGACGTGCCTTGCGGCAACACCGTCGCCATGGTCGGCCTCGAC CAGTTCATCACCAAGAACGCCACGCTCACCGACGAGAAGGCGGTGGACGCGCACCCCATC AAGGCCATGAAGTTCTCCGTGTCGCCGGTCGTGCGCAAGTCGGTGGCCTGCAAGAACGCC TCCGAGCTGCCCAAGCTGGTGGAAGGGTTGAAGCGCCTCGCCAAGTCGGACCCCCTGGTG GTGTGCACCATTGAGGAGTCCGGCGAGCACGTCATCGCCGGCGTGGGGCAGCTCCACCTG GAGATTTGCATCAAGGATCTCCAAGAGGACTTCATGGGCGGCGCCGAGATCATCGTTGGC CCGCCGATCATCACCTACCGTGAGACCGTCACCAAAAACTCGTGTCGCACCGTCATGAGC AAATCGCCGAACAAGCACAACAGGCTGTACATGGAGGCCCGGCCGCTGGACAAGGAGGAC CTGCAGCAGGATGAACCGTCGCTGTGCAAGGCGATTGACGACGAGCGCATCGGCCCCAAG GACGACATCAAGGAGCGCGGCAAGATCCTCTCGGAGGAGTTCGGGTGGGACAAGGATCTG GCCAAGAAGATCTGGGCCTTCGGCCCGGAGACCAAGGGCCCCAACCTGCTCGTCGACATG TGCAAGGGCGTCCAGTACCTGAGCGAGATCAAGGACTCGGTGGTCGCCGGCTTCCAGTGG GCGTCCAAGGAAGGCGCGCTCGCGGAGGAGAACATGCGCGGCGTCTGCTTCGAGCTCTGC GACGTCACGCTGCACTCGGACTCCATCCACCGCGGCGGCGGCCAGCTCATCCCTACCGCG CGCCGCGCCATGTACGCCGCGCAGCTCACGGCTTCGCCGCGCCTGATGGAGCCCATGTAC CAGGTGGACATCCAGGTTCCCAAGACGGCGGTGGGCAACGTCTACGGCGTGCTCAACAGC AGGAACGGCGAGCTGGTGGAAGAGAGCGAGAGGACTGGCACGCCCTTGTCCAACCTCAGG TTCTACCTCCCCGTCGCCAAGTCGTTCGACTTCACCGAGAAGCTGCGCGCCGAGACGTCC GGCCAGGCCTTCCCGCAGTGCATCTTCCACCACTGGCAGACCATGCGGTCTGATCCGTTC CAGGAGGGCTCCGAAGCTGCCAAGGTGATCACCGACATCAGGAAGAGGAAGGGTCTCAAG GACATCATCACCCCGCTCTCAGACTACGAGGACAAGCTTTGA

Peptide Sequence

PEP ID	Os01t0723000-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:30143647:30146827:-1 gene:Os01g0723000 transcript:Os01t0723000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Elongation factor EF-2 (Fragment). (Os01t0723000-01)
Sequence	MVRFTAEELRASMDKKDNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQDVAGDVRMTDTR ADEAERGITIKSTGISLYYEMTDAALRSFEGKRDGNSYLINLIDSPGHIDFSSEVTAALR ITDGALVVVDCIEGVCVQTETVLRQSLAERIKPVLTVNKMDRCFLELQQSGEEAYQAFSR VIESVNVTMAPYEDKNLGDCMVAPEKGTVAFSAGLHGWAFTLSNFAKMYKAKFKVDEAKM MERLWGENYFDHTTKKWTTTAPSTSSKTCQRGFVQFCYEPIRRIISACMNDDKENLWDML TKLKITLKAEEKELTGKKLMKRVMQAWLPASDALLEMIVFHLPSPAKAQQYRVDTLYDGP LDDPYATAIRNCDPKGPLMVYVSKMIPASDKGRFFAFGRVFSGTVATGNKVRIMGPNFVP GEKKDLYVKTVQRTVIWMGKKQESVDDVPCGNTVAMVGLDQFITKNATLTDEKAVDAHPI KAMKFSVSPVVRKSVACKNASELPKLVEGLKRLAKSDPLVVCTIEESGEHVIAGVGQLHL EICIKDLQEDFMGGAEIIVGPPIITYRETVTKNSCRTVMSKSPNKHNRLYMEARPLDKED LQQDEPSLCKAIDDERIGPKDDIKERGKILSEEFGWDKDLAKKIWAFGPETKGPNLLVDM CKGVQYLSEIKDSVVAGFQWASKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTA RRAMYAAQLTASPRLMEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLR FYLPVAKSFDFTEKLRAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLK DIITPLSDYEDKL

Transcript Sequence

Transcript ID	Os01t0723000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:30143647:30146827:-1 gene:Os01g0723000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Elongation factor EF-2 (Fragment). (Os01t0723000-01)
Sequence	GCCCCTCCCTGACATCTCCTTCCTCTCCCCCTTCGCCTGCGCCTCTGCTCCTCGTCAGGT TGCCAAGATGGTGAGGTTTACGGCGGAGGAGCTCCGCGCGAGCATGGATAAGAAGGACAA CATCCGGAACATGTCTGTGATCGCGCACGTTGATCATGGGAAGTCGACGCTCACTGACTC GCTGGTGGCGGCGGCCGGCATCATCGCGCAGGACGTGGCCGGCGACGTGCGGATGACGGA CACGCGCGCGGACGAGGCCGAGCGCGGCATCACCATCAAGTCGACGGGGATATCCCTCTA CTACGAGATGACGGACGCGGCGCTCAGGAGCTTCGAGGGCAAGCGCGACGGCAACTCGTA CCTCATCAACCTCATCGACTCGCCCGGGCACATCGACTTCTCGTCCGAGGTGACGGCCGC GCTCCGCATCACCGACGGCGCCCTCGTCGTCGTCGACTGCATCGAGGGCGTCTGCGTCCA GACCGAGACCGTGCTCCGCCAGTCGCTCGCCGAGCGGATCAAGCCCGTCCTCACCGTCAA CAAGATGGACCGCTGCTTCCTTGAGCTGCAGCAATCCGGTGAGGAGGCGTACCAGGCGTT CTCCCGCGTGATCGAGAGCGTGAACGTCACCATGGCGCCCTACGAGGACAAGAATCTCGG CGACTGCATGGTGGCTCCGGAGAAGGGCACGGTGGCGTTTTCGGCCGGCCTGCACGGCTG GGCCTTCACCCTGTCCAACTTCGCCAAGATGTACAAGGCCAAGTTCAAGGTGGACGAGGC CAAGATGATGGAGCGGCTTTGGGGCGAGAACTACTTCGACCATACCACCAAGAAGTGGAC GACGACCGCACCATCGACGTCGTCCAAGACGTGCCAGCGCGGGTTCGTGCAGTTCTGCTA CGAGCCGATCCGCCGGATCATCTCGGCGTGCATGAACGACGACAAGGAGAATCTGTGGGA CATGCTGACGAAGCTCAAGATCACGCTCAAGGCTGAGGAGAAGGAGCTGACCGGCAAAAA GCTGATGAAGCGCGTCATGCAGGCGTGGCTCCCGGCCAGCGACGCGCTCCTCGAGATGAT CGTCTTCCACCTGCCTTCCCCAGCCAAGGCGCAGCAGTACCGCGTCGACACCCTCTACGA CGGGCCCCTCGACGACCCCTACGCCACCGCCATTCGCAACTGCGACCCCAAGGGACCCCT CATGGTGTACGTGTCCAAGATGATCCCGGCGAGCGACAAGGGGAGGTTCTTCGCCTTCGG CCGCGTCTTCTCCGGCACAGTGGCCACCGGCAACAAGGTGCGGATCATGGGCCCCAACTT CGTGCCCGGCGAGAAGAAGGACCTGTACGTCAAGACGGTGCAGCGCACGGTGATCTGGAT GGGCAAGAAGCAGGAGTCCGTGGACGACGTGCCTTGCGGCAACACCGTCGCCATGGTCGG CCTCGACCAGTTCATCACCAAGAACGCCACGCTCACCGACGAGAAGGCGGTGGACGCGCA CCCCATCAAGGCCATGAAGTTCTCCGTGTCGCCGGTCGTGCGCAAGTCGGTGGCCTGCAA GAACGCCTCCGAGCTGCCCAAGCTGGTGGAAGGGTTGAAGCGCCTCGCCAAGTCGGACCC CCTGGTGGTGTGCACCATTGAGGAGTCCGGCGAGCACGTCATCGCCGGCGTGGGGCAGCT CCACCTGGAGATTTGCATCAAGGATCTCCAAGAGGACTTCATGGGCGGCGCCGAGATCAT CGTTGGCCCGCCGATCATCACCTACCGTGAGACCGTCACCAAAAACTCGTGTCGCACCGT CATGAGCAAATCGCCGAACAAGCACAACAGGCTGTACATGGAGGCCCGGCCGCTGGACAA GGAGGACCTGCAGCAGGATGAACCGTCGCTGTGCAAGGCGATTGACGACGAGCGCATCGG CCCCAAGGACGACATCAAGGAGCGCGGCAAGATCCTCTCGGAGGAGTTCGGGTGGGACAA GGATCTGGCCAAGAAGATCTGGGCCTTCGGCCCGGAGACCAAGGGCCCCAACCTGCTCGT CGACATGTGCAAGGGCGTCCAGTACCTGAGCGAGATCAAGGACTCGGTGGTCGCCGGCTT CCAGTGGGCGTCCAAGGAAGGCGCGCTCGCGGAGGAGAACATGCGCGGCGTCTGCTTCGA GCTCTGCGACGTCACGCTGCACTCGGACTCCATCCACCGCGGCGGCGGCCAGCTCATCCC TACCGCGCGCCGCGCCATGTACGCCGCGCAGCTCACGGCTTCGCCGCGCCTGATGGAGCC CATGTACCAGGTGGACATCCAGGTTCCCAAGACGGCGGTGGGCAACGTCTACGGCGTGCT CAACAGCAGGAACGGCGAGCTGGTGGAAGAGAGCGAGAGGACTGGCACGCCCTTGTCCAA CCTCAGGTTCTACCTCCCCGTCGCCAAGTCGTTCGACTTCACCGAGAAGCTGCGCGCCGA GACGTCCGGCCAGGCCTTCCCGCAGTGCATCTTCCACCACTGGCAGACCATGCGGTCTGA TCCGTTCCAGGAGGGCTCCGAAGCTGCCAAGGTGATCACCGACATCAGGAAGAGGAAGGG TCTCAAGGACATCATCACCCCGCTCTCAGACTACGAGGACAAGCTTTGAGCTGCCTCTCT ACATACGTATCCTAGTTTTGAGTTTTTGAGTTTTGAGTTTGGTCTAATTTTGAGTTTTTG AGTATGGTCTTGGTCTTTCAAATTAAGTGTGTCTCCTGTCTCTTCCTCTGCTAACTGTTT CGAGTCTGATATTGGTTAGCCAGCCTTTGTGCCAGTCAGTTTAGGATGAAATGGTGAGTT AAGTAGTTGCAAGTTATGTTTACCTTTCAGCAAATTTTGTTCTG