Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0716400-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:29816823:29819737:1 gene:Os01g0716400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Violaxanthin de-epoxidase family protein. (Os01t0716400-01)
Sequence	ATGGCAGCCACGCCCACCACGTCCGCCTCCGCGGCGGCCACCACTCGCCTCTTCCTACCT ACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGC CGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGC GGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGC GACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGCT AATAGGATGAAGTGGGTTGACGAAGGATTTGAAATGCTTGTCTTCACAGACAAGTCAATT GGCCATGATGAACTTAGGAAAGAGCTGGCACAGTGTGATATGCTAGTCAATGTTGCAATA ACGAGTCAGGAGACTGTTCAGTGGCTTATAAATAACAGTGAGGACATTCCCAATATAATC TGCTTTCAATCATCTCCAACCTTAGAAAACAAGTTAGGTGGCAGGTATGTTCAATACACT GGACGTCAGGACATGTTTTGCAAGCTAACAAATATTGGAGAAACAGGTGGCATGAAGGAA TCTGCTGAAGTCCTTAAGGCTGTATCTAATGCCTGGGAAAGGCATAATTCAGATGACATT AGATTTTGCTTACTTGTTGTGGTTAATGCGTACATAAGACCTGTTGATATGCTGCAAAAC CTTAGGGCAAAAGGTCTGTCTACCCTAAGCTGTATGATAAGAAATTGTGGTCCTCAGATA CTGAATTGTCTGTTCGATCCCAACTGTAGGAAAGCCCTTCAGTGTTTAAATTCATGTTCT CCAACTGATCAAGTTTGCAACTATCGCTGCATTGCGTCGTATGAGAGTCCGCATCTGGAG GCCTTTTCTTTATGTGTTTTGCAGAAGAACAATTGTCTTGATCTCAATGCCGAGATCCCC AGTAAGCCCTCTGTACCCCCACTAACCATGTTCAGAGAACAAATGCTAAGCCATGAACTT GCAGAAGACATGTTTGTTGGATGGTTGGACAACTTGGAATGGAGTTGGAGAGTTGTAGCT GGACAAAATCCAGCATATGATCAATTCCCATGTCAGTATCAATTATTTTACAGGGGAAAA GCTAAAGGTTCATTTTGGTATGAGCCAATTTTTCAAGTCAGAACCCTGGAAGGGGAACTG GTTTGGAGGCGCAGAAAGTACCGAGTAAGAAGAGCTCTCATCCCTGGTACATTTTACTTC AGTGTGCTGGATAATGGTGTGGTTTCAAAGGAGTTTTGGACAATCGTTGATGTTTCAGAT GATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGGCCGCTGGACTAGCATAC ACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTG GCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGT TCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAAGCTGCATTATCAGATTGCT CCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGA

Peptide Sequence

PEP ID	Os01t0716400-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:29816823:29819737:1 gene:Os01g0716400 transcript:Os01t0716400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Violaxanthin de-epoxidase family protein. (Os01t0716400-01)
Sequence	MAATPTTSASAAATTRLFLPTRRHLHETASVPAPSRTIARRYSGGVRSLGPPRAAAGELG GGAGGTITGKGAVRIVSIVGDGSISPLKDTPWEEVMRHTANRMKWVDEGFEMLVFTDKSI GHDELRKELAQCDMLVNVAITSQETVQWLINNSEDIPNIICFQSSPTLENKLGGRYVQYT GRQDMFCKLTNIGETGGMKESAEVLKAVSNAWERHNSDDIRFCLLVVVNAYIRPVDMLQN LRAKGLSTLSCMIRNCGPQILNCLFDPNCRKALQCLNSCSPTDQVCNYRCIASYESPHLE AFSLCVLQKNNCLDLNAEIPSKPSVPPLTMFREQMLSHELAEDMFVGWLDNLEWSWRVVA GQNPAYDQFPCQYQLFYRGKAKGSFWYEPIFQVRTLEGELVWRRRKYRVRRALIPGTFYF SVLDNGVVSKEFWTIVDVSDDFSWGLFHYHGAAQAAGLAYTGAVLVSPDGSCPDLDDPRL ASALDKCGIKKWELYMVDNCSCTGAPLGTPGDAKLHYQIAPGKESGILQTG

Transcript Sequence

Transcript ID	Os01t0716400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:29816823:29819737:1 gene:Os01g0716400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Violaxanthin de-epoxidase family protein. (Os01t0716400-01)
Sequence	GTCCACCTCCTCTTCCCAGACTCCCATGGCAGCCACGCCCACCACGTCCGCCTCCGCGGC GGCCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCC TGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACC GCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGC CGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATG GGAGGAGGTTATGCGCCACACGGCTAATAGGATGAAGTGGGTTGACGAAGGATTTGAAAT GCTTGTCTTCACAGACAAGTCAATTGGCCATGATGAACTTAGGAAAGAGCTGGCACAGTG TGATATGCTAGTCAATGTTGCAATAACGAGTCAGGAGACTGTTCAGTGGCTTATAAATAA CAGTGAGGACATTCCCAATATAATCTGCTTTCAATCATCTCCAACCTTAGAAAACAAGTT AGGTGGCAGGTATGTTCAATACACTGGACGTCAGGACATGTTTTGCAAGCTAACAAATAT TGGAGAAACAGGTGGCATGAAGGAATCTGCTGAAGTCCTTAAGGCTGTATCTAATGCCTG GGAAAGGCATAATTCAGATGACATTAGATTTTGCTTACTTGTTGTGGTTAATGCGTACAT AAGACCTGTTGATATGCTGCAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAAGCTGTAT GATAAGAAATTGTGGTCCTCAGATACTGAATTGTCTGTTCGATCCCAACTGTAGGAAAGC CCTTCAGTGTTTAAATTCATGTTCTCCAACTGATCAAGTTTGCAACTATCGCTGCATTGC GTCGTATGAGAGTCCGCATCTGGAGGCCTTTTCTTTATGTGTTTTGCAGAAGAACAATTG TCTTGATCTCAATGCCGAGATCCCCAGTAAGCCCTCTGTACCCCCACTAACCATGTTCAG AGAACAAATGCTAAGCCATGAACTTGCAGAAGACATGTTTGTTGGATGGTTGGACAACTT GGAATGGAGTTGGAGAGTTGTAGCTGGACAAAATCCAGCATATGATCAATTCCCATGTCA GTATCAATTATTTTACAGGGGAAAAGCTAAAGGTTCATTTTGGTATGAGCCAATTTTTCA AGTCAGAACCCTGGAAGGGGAACTGGTTTGGAGGCGCAGAAAGTACCGAGTAAGAAGAGC TCTCATCCCTGGTACATTTTACTTCAGTGTGCTGGATAATGGTGTGGTTTCAAAGGAGTT TTGGACAATCGTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGC CGCTCAGGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTG TCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTG GGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGA TGCAAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTG ATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAG GCAGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCA CTGTTGCACCCACTAGACTACAAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAG TAATTATGTAAAATGAGCGGTTCTTTATCTTATATAGTTATCATCTAATGTCATGCCTTT TTTACTGTC