Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0700200-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:28978119:28983863:1 gene:Os01g0700200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA28 description:Similar to Chromosome condensation regulator protein (Fragment). (Os01t0700200-01)
Sequence	ATGACACCAGATGAAACTGCCCTTATTACTTTAAAGAAAGGTACTAAACTCATCAAGTAT AGCCGGAGAGGAAAACCCAAGATCCGTGCGTTCAGACTTTCTAGCGATGAAACATCTTTA ATTTGGTTTTCTCACAAAAAGGAAAAGTTCCTCAGACTGTCTTCTGTCACTAAGATCATT CCTGGACAGAGAACTGCTGTGTTTGGGAGGTTTTTACACCCTGAGAAGGATTATTTATCA TTTTCCCTCATATTTAAAAACGGGCAACGCTCACTTGATCTGGTTTGTAAGGATCAAGCT GAAGTTGAAGTCTGGTTTTCAGCACTTGAGGGGTTAATAAGTTCATTCCGCAAAAAATCT TTGATTAACGAACACAAGGATAGAGTATCATTTTCTGAAGAAGTAACTTATTATCAAGAT CGCCATTCCTATGATTCAACACTAGATATTGCTTCAAATATTTCACGCAGTTTTAACTCA GCTGGTTACTGTGGAACCAATTCATTTAGTTTCAGAAAATCAGATGTGGGATTTGATCGT CTAAATATGATAAGAACAAGTGCTGCAGACAGTAGCCGGGTTAGTATTTCTAGTGCCCTT AGTTCTTACAGTCAAGGTTCTGGAACAGATGACATAGAATCCCTTGGTGATGTTTATGTC TGGGGTGAAGTATGGACTGATGTAACCCCATCAGATGGGCACACAAGCTCTTCATGCTCA AAAGTAGATGTTTTGATCCCCAAACCTTTAGAATCTGATGTCGTGTTAGATGTTAATCAG ATAGCATGTGGTACGAGACATGTAGCTCTTACTACCAGGCAAGGAGAGGTGTTTACGTGG GGTGAGGAATTTGGTGGGCGCCTAGGTCACGGAACTGATGCTGATATTAGTCGCCCCAAG CTTGTCGAGTCTTTATCACTAACCGTAGTTGATCTTATTTCATGTGGAGAATTCCATACT TGTGCTGTGACTACTTCCGGTGATCTATTCAATTGGGGGGATGGTTCTTACAATGTCGGA CTGCTTGGGTGTGGCACTGAAGTTAGCTACTGGCTTCCAAAGAAAGTCTCAGGGCCCTTA GAAGGTCTTCAAGTTCTATCTGTTGCATGTGGCTCATGGCATTCTGCTTTGACCACATCA AGTGGAAAACTTTACACATTTGGTGATGGAACATTTGGTGTTCTTGGACATGGTGACCGT GAAACTTTAGCATACCCAAAAGAGGTAGAAGCCTTGAGTGGATTCAAAACGATCAAAGTT GCATGTGGAATTTGGCATTCTGCAGCAATTGTGGAGGTTACTAATCAGACAGGTGCAAAT GTGATGTCTAAGAAGTTATATACCTGGGGTGATGGAGATAAGAACCGCCTTGGCCATGGG GACAAAGAGCCTAGGTTAGTTCCTAAATGTGTTCAAGCGCTTTTAGAGTACAATTTTCAT CAGCTGGCTTGTGGACATAATATGACTGTTGCCCTAGCTACATCTGGTCGTGTGTTTACC ATGGGTAGTTCCAGCAATGGCCAGCTTGGAAATCCAAAATCTGATGGCAAGCAGCCTTGC TTAGTTCAAGATAGATTGGCTAGTGAGTTGGTTGAAGAGATTTCATGTGGAGCTTCTCAT GTTACAGTTTTGACTTCAAGAAGTGAAGTATATACATGGGGAATGGGTGCCAATGGAAGA CTTGGTCATGGCGATCTCAAGGACAGGAAGAAGCCATGTCTTGTTGAAGCACTTAAAGAT CGGCATGTCAAGAGTATATCATGTGGTTCAAATTTCACAACATGTATTTGCATACATAAG TGGGTATCAGGTGCAGATCAATCTGTCTGCACGGGTTGCAGGCAAGCATTTGGTTTCACT AGAAAGAGACATGATTGCTACAACTGTGGGCTGGTTCATTGTCATGCTTGCAGTTCAAGA AAAGTGTTGAAGGCTGCTCTAGCACCAACTCCAGGCAAGCCACATCGTGTGTGTGATTCA TGCTTTCTAAAATTGAAAGCCGCAGAGACCGGCAGCAACAATTCTAACAGAAGAAATGCT GTTACTCGTCGCTCTATTGATGGGAGAGAGAAGCTTGAGAGGCCAGAAATAAGGCCTTCC AGGACAACAGCACCAGCGGAATCAGTCAAGTATACAGAGGTAAAAGCTGCAAGAAATGAT ATGAGAGCATCCCAAATTTCTTCCTTGCTACAGTTCAAAGATCTTAGCTTCTCTGCTCTT CAACCCACGGCGATGTCACCAGCTGTAACTATGTCACCTGCAGTACCTGCACTCTCAACA CCATCTCCATACACAAAGAAAACAAAATCACCTGCACCTGCAATCCCGCAATTCCCTAAA ACTGATATAGATAACTTGCAGAAGTCTAACGAATTGCTGAATCAAGAAATGTTGAAGCTG CAATCTCAGGTTGATAGCTTAAAACAAAAGTGCGAGGCCCAACACGAGCAGCTTCAGATA TCAGATAAGAAAACTAAAACAGTTGTCTCTATGGCCACGGAAGAATATACTAGATGCAGT GCTGTGGTCGAGTTTGTTAAATTTCTTGATAACGAGCTCAATGGTATAGTGCATGAACTG CCCAGCGATGCAGCAGAAAGCTTGAAAGCCTTACAAAATCAGGTGCAGGCACTGCTGAGG GAGCAAAGAAGTCATCCTTCTGAGCTTCTAAATCCTATGGATCATGATGGTATTCAACTG TCTAGTGGTGGAAATGCATTACATGATTTTTCCAATCATAGGTCAGGAAGTACACGCTAC TTGTTCATGTCACAAGATGCCAGTTCTGCAAGTGGCTCTGCCATTTCACTTACAAGTGAA CCCCCTTCCCATCGTGGCATGGAACACCACGCAAAGGTTCCTAACGATTTTGTACCGAAG CATGATACTCATGGAGAAGTTCAATTAATTGAGCAGTTTGAACCTGGTGTATATGTCACA CTTATCCAGCTGAAGGATGGTAGCAAAGTATTCAAGCGGGTCCGGTTCAGCAAGAAGAAA TTTGCAGAGAATCAGGCTGAAGAATGGTGGCGGGAAAACCAAGAGCGGGTCTTCAAGAAG TACAGCCATCCGACTGTTCCTCAAACAACATCAACGAAAACAGGATCTTCTAACGAGGAA GAACATCACTCATGA

Peptide Sequence

PEP ID	Os01t0700200-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:28978119:28983863:1 gene:Os01g0700200 transcript:Os01t0700200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA28 description:Similar to Chromosome condensation regulator protein (Fragment). (Os01t0700200-01)
Sequence	MTPDETALITLKKGTKLIKYSRRGKPKIRAFRLSSDETSLIWFSHKKEKFLRLSSVTKII PGQRTAVFGRFLHPEKDYLSFSLIFKNGQRSLDLVCKDQAEVEVWFSALEGLISSFRKKS LINEHKDRVSFSEEVTYYQDRHSYDSTLDIASNISRSFNSAGYCGTNSFSFRKSDVGFDR LNMIRTSAADSSRVSISSALSSYSQGSGTDDIESLGDVYVWGEVWTDVTPSDGHTSSSCS KVDVLIPKPLESDVVLDVNQIACGTRHVALTTRQGEVFTWGEEFGGRLGHGTDADISRPK LVESLSLTVVDLISCGEFHTCAVTTSGDLFNWGDGSYNVGLLGCGTEVSYWLPKKVSGPL EGLQVLSVACGSWHSALTTSSGKLYTFGDGTFGVLGHGDRETLAYPKEVEALSGFKTIKV ACGIWHSAAIVEVTNQTGANVMSKKLYTWGDGDKNRLGHGDKEPRLVPKCVQALLEYNFH QLACGHNMTVALATSGRVFTMGSSSNGQLGNPKSDGKQPCLVQDRLASELVEEISCGASH VTVLTSRSEVYTWGMGANGRLGHGDLKDRKKPCLVEALKDRHVKSISCGSNFTTCICIHK WVSGADQSVCTGCRQAFGFTRKRHDCYNCGLVHCHACSSRKVLKAALAPTPGKPHRVCDS CFLKLKAAETGSNNSNRRNAVTRRSIDGREKLERPEIRPSRTTAPAESVKYTEVKAARND MRASQISSLLQFKDLSFSALQPTAMSPAVTMSPAVPALSTPSPYTKKTKSPAPAIPQFPK TDIDNLQKSNELLNQEMLKLQSQVDSLKQKCEAQHEQLQISDKKTKTVVSMATEEYTRCS AVVEFVKFLDNELNGIVHELPSDAAESLKALQNQVQALLREQRSHPSELLNPMDHDGIQL SSGGNALHDFSNHRSGSTRYLFMSQDASSASGSAISLTSEPPSHRGMEHHAKVPNDFVPK HDTHGEVQLIEQFEPGVYVTLIQLKDGSKVFKRVRFSKKKFAENQAEEWWRENQERVFKK YSHPTVPQTTSTKTGSSNEEEHHS

Transcript Sequence

Transcript ID	Os01t0700200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:28978119:28983863:1 gene:Os01g0700200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA28 description:Similar to Chromosome condensation regulator protein (Fragment). (Os01t0700200-01)
Sequence	GGGCTAGCATTTTGGTTGGTTCGATGGAGTCTAAATCCCCCAGTTTTTAATCTGTAGACT CGGACGCTAGCTGGCCGGCGCAAATATGTGACTGTGTAAAGCTGACAATAGGATGTTGAC ATGTTGCTGTTTAGATGACACCAGATGAAACTGCCCTTATTACTTTAAAGAAAGGTACTA AACTCATCAAGTATAGCCGGAGAGGAAAACCCAAGATCCGTGCGTTCAGACTTTCTAGCG ATGAAACATCTTTAATTTGGTTTTCTCACAAAAAGGAAAAGTTCCTCAGACTGTCTTCTG TCACTAAGATCATTCCTGGACAGAGAACTGCTGTGTTTGGGAGGTTTTTACACCCTGAGA AGGATTATTTATCATTTTCCCTCATATTTAAAAACGGGCAACGCTCACTTGATCTGGTTT GTAAGGATCAAGCTGAAGTTGAAGTCTGGTTTTCAGCACTTGAGGGGTTAATAAGTTCAT TCCGCAAAAAATCTTTGATTAACGAACACAAGGATAGAGTATCATTTTCTGAAGAAGTAA CTTATTATCAAGATCGCCATTCCTATGATTCAACACTAGATATTGCTTCAAATATTTCAC GCAGTTTTAACTCAGCTGGTTACTGTGGAACCAATTCATTTAGTTTCAGAAAATCAGATG TGGGATTTGATCGTCTAAATATGATAAGAACAAGTGCTGCAGACAGTAGCCGGGTTAGTA TTTCTAGTGCCCTTAGTTCTTACAGTCAAGGTTCTGGAACAGATGACATAGAATCCCTTG GTGATGTTTATGTCTGGGGTGAAGTATGGACTGATGTAACCCCATCAGATGGGCACACAA GCTCTTCATGCTCAAAAGTAGATGTTTTGATCCCCAAACCTTTAGAATCTGATGTCGTGT TAGATGTTAATCAGATAGCATGTGGTACGAGACATGTAGCTCTTACTACCAGGCAAGGAG AGGTGTTTACGTGGGGTGAGGAATTTGGTGGGCGCCTAGGTCACGGAACTGATGCTGATA TTAGTCGCCCCAAGCTTGTCGAGTCTTTATCACTAACCGTAGTTGATCTTATTTCATGTG GAGAATTCCATACTTGTGCTGTGACTACTTCCGGTGATCTATTCAATTGGGGGGATGGTT CTTACAATGTCGGACTGCTTGGGTGTGGCACTGAAGTTAGCTACTGGCTTCCAAAGAAAG TCTCAGGGCCCTTAGAAGGTCTTCAAGTTCTATCTGTTGCATGTGGCTCATGGCATTCTG CTTTGACCACATCAAGTGGAAAACTTTACACATTTGGTGATGGAACATTTGGTGTTCTTG GACATGGTGACCGTGAAACTTTAGCATACCCAAAAGAGGTAGAAGCCTTGAGTGGATTCA AAACGATCAAAGTTGCATGTGGAATTTGGCATTCTGCAGCAATTGTGGAGGTTACTAATC AGACAGGTGCAAATGTGATGTCTAAGAAGTTATATACCTGGGGTGATGGAGATAAGAACC GCCTTGGCCATGGGGACAAAGAGCCTAGGTTAGTTCCTAAATGTGTTCAAGCGCTTTTAG AGTACAATTTTCATCAGCTGGCTTGTGGACATAATATGACTGTTGCCCTAGCTACATCTG GTCGTGTGTTTACCATGGGTAGTTCCAGCAATGGCCAGCTTGGAAATCCAAAATCTGATG GCAAGCAGCCTTGCTTAGTTCAAGATAGATTGGCTAGTGAGTTGGTTGAAGAGATTTCAT GTGGAGCTTCTCATGTTACAGTTTTGACTTCAAGAAGTGAAGTATATACATGGGGAATGG GTGCCAATGGAAGACTTGGTCATGGCGATCTCAAGGACAGGAAGAAGCCATGTCTTGTTG AAGCACTTAAAGATCGGCATGTCAAGAGTATATCATGTGGTTCAAATTTCACAACATGTA TTTGCATACATAAGTGGGTATCAGGTGCAGATCAATCTGTCTGCACGGGTTGCAGGCAAG CATTTGGTTTCACTAGAAAGAGACATGATTGCTACAACTGTGGGCTGGTTCATTGTCATG CTTGCAGTTCAAGAAAAGTGTTGAAGGCTGCTCTAGCACCAACTCCAGGCAAGCCACATC GTGTGTGTGATTCATGCTTTCTAAAATTGAAAGCCGCAGAGACCGGCAGCAACAATTCTA ACAGAAGAAATGCTGTTACTCGTCGCTCTATTGATGGGAGAGAGAAGCTTGAGAGGCCAG AAATAAGGCCTTCCAGGACAACAGCACCAGCGGAATCAGTCAAGTATACAGAGGTAAAAG CTGCAAGAAATGATATGAGAGCATCCCAAATTTCTTCCTTGCTACAGTTCAAAGATCTTA GCTTCTCTGCTCTTCAACCCACGGCGATGTCACCAGCTGTAACTATGTCACCTGCAGTAC CTGCACTCTCAACACCATCTCCATACACAAAGAAAACAAAATCACCTGCACCTGCAATCC CGCAATTCCCTAAAACTGATATAGATAACTTGCAGAAGTCTAACGAATTGCTGAATCAAG AAATGTTGAAGCTGCAATCTCAGGTTGATAGCTTAAAACAAAAGTGCGAGGCCCAACACG AGCAGCTTCAGATATCAGATAAGAAAACTAAAACAGTTGTCTCTATGGCCACGGAAGAAT ATACTAGATGCAGTGCTGTGGTCGAGTTTGTTAAATTTCTTGATAACGAGCTCAATGGTA TAGTGCATGAACTGCCCAGCGATGCAGCAGAAAGCTTGAAAGCCTTACAAAATCAGGTGC AGGCACTGCTGAGGGAGCAAAGAAGTCATCCTTCTGAGCTTCTAAATCCTATGGATCATG ATGGTATTCAACTGTCTAGTGGTGGAAATGCATTACATGATTTTTCCAATCATAGGTCAG GAAGTACACGCTACTTGTTCATGTCACAAGATGCCAGTTCTGCAAGTGGCTCTGCCATTT CACTTACAAGTGAACCCCCTTCCCATCGTGGCATGGAACACCACGCAAAGGTTCCTAACG ATTTTGTACCGAAGCATGATACTCATGGAGAAGTTCAATTAATTGAGCAGTTTGAACCTG GTGTATATGTCACACTTATCCAGCTGAAGGATGGTAGCAAAGTATTCAAGCGGGTCCGGT TCAGCAAGAAGAAATTTGCAGAGAATCAGGCTGAAGAATGGTGGCGGGAAAACCAAGAGC GGGTCTTCAAGAAGTACAGCCATCCGACTGTTCCTCAAACAACATCAACGAAAACAGGAT CTTCTAACGAGGAAGAACATCACTCATGATCTTTAATGAGGTTTCTACAAATTGCGGAAG AAGCTTCAAATTGGTGAGACACTGTACAGCGAGTCTTGACAGGAAATTTCGACTCTCTAA TTGGTTATTGCTCGGAGAAAAATACCTGCTTATGTCGAAAGTATAGGATAATTTTTATTT AGTGCCAAAACTTAGTTTAGTTACAGACCATATTAAAAGCAAGTCGGAGTTAAGTAACTC TTTTCTAGGTGAGAAATTAGTAGAGTATTGAGTATTGACTATCTGGGTCGATGTTGCGAA GGGAATGACGGAGGAAGCGGCGCTCTGGCGGGCGGCAAACTCGGCAATCCCATCATTTCT TTCACAAATCCCAGGCCATTTTGTTTCTGTCTTCCAGTATCGGCCCCCTGCTGTTTTTCG ATCTTTAATTGTAAATAACTTTTATTTCTCTTAATAGAAAAAATGCGCCTGTGGCGTATT CC