Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0698100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:28885452:28890777:1 gene:Os01g0698100 gene_biotype:protein_coding transcript_biotype:protein_coding description:SWAP/Surp domain containing protein. (Os01t0698100-01);Similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein. (Os01t0698100-02)
Sequence

ATGGATCTGGAGATCGTGGGCCGGCACGCGCTGCTGTTCGACGACGACCCGACGGCGGAG
GTCGTCAACTCCGGCGGCTCCCTCGTCCCCTGGGCCGCCGTCGGCGCGGACGACCTCCTC
CTCGACCGCCACGACGTCCGGCACCTGCTCGACCGCGTGCCTCCTCGCCCCCGCCGCTCC
TACTCCGCGGCCCTCCTCTCTGCCCCCTCTCTGGATGGCGTCTCCGAGGCTGAACTCGAC
CGCGAGCGCTTCCTCGACCTCACCGCCGACGATTTCGGCGGCGAGGGCTCTCAAGATGCG
GTCTCTTCAGGAAATGGGACAGATACAGGTTGGGCTGATTATAATTCTGTCCCTTTCTCA
TATGGGAGTACTGCTGGTTCAGATGATCCAAATAATTTGAGCACATATTATTGCCCATCT
TTTCCCGTGCCTGACAGATTGTTGAATAAGCTGCCTCCTTCTGAGAAGGTTCATCAAATT
ATTGCAAGAACTGCTCTATTTGTCAGTGAGCATGGGGGCCAGTCAGAGATTGTGTTAAGG
GTGAAACAGGGTAGTAATCCAACATTTGGTTTCTTGATGCCTGACCATCATCTCCACAGC
TACTTCCGGTACCTTGTAGATCATCCTCAGTTGTTGAAAGATGGTCTAGATGCTGATTCA
AACAAGGGCTGCAAAACTGCCAATAGTGAGAGTGGGCATGATGCATCATCAGGCGGGGCT
TTGTCATTGCTTGGGGCTGTCTATGAGTCTGGAGATGAGGATGAAGGCATGCTTCCGCCT
AGTCCAAAAAGCACGGTTCCTGGAAAAGACGTGGTTGTGCATGAGCAAGGTCATGAAAGC
TCTGTATCTGCTATACATTGCAACGAAGAAACACGGGATGGTCAGAAAGCAACGGCAGCA
GCTACTGTTGCAGCTAAAGATAAATCTATTTTGACTAAGAAGAACCCAATGATTACTGGC
AGCAGCCTTCTTGCTGCTCGCCTAGAGAAGGCCAAAGATGCCATGATGGCATCAAGTACG
TCAGATGTTTCTGACACAAAAGTTGTGATTCTGGAACCACCATCTTTCTTGAAGCGTACA
ATGGAGAAAATAGTTGAATTTATTATCAGGAATGGGAAAGAGTTTGAAGGAAAACTCATT
GAGCAAGACAGAACAACAGGAAGGTTTCCATTTCTTCTGCCATCTAATCCATATCACCCG
TATTATCTGAAGCTTCTCGAGGAAACTCAAGAGTCCAAGTCCCGTGGTGGTTCTTCAGAG
CCCAAAGACAGAAAAAGCTCTTCAGAGCACAAAGACCGAAGAAGCTCTTCAGAGCAGAAA
GACAGAAGAAGCCCTTCAGAGCGCAAAGGTAGTAATCATGGTAAGGGAGAAAGTAAAAGC
AAGAAACGGTCAAGTACTAGCAAGGATGCCAGTTCTCCTGATAGAAGCTCTGCTGAGCCG
TCAGAGAAGCAGCTCTATGACAAACACAAACAAGGGAAGGGAAAGTTCCACATGATCATT
AGTGGGGCCAAGAAGGAACCTCCTCGGAATGTCACTGCAGATGAAGCTGCTGCTATTGTT
ATGGCAGCTACTCGTGGATTTGGCCCTGCCAATATTCAAACAAACACACTGAAGGACACT
AGTGGAATTGGTCAGACCCGTGGAGATAATGGACATACTTCAAGCTTTGGAAGTTTCTCC
TCTTTACAGGACCCAGATGTACCATCCAAACCTGTTTCAAATAGTGAGGCATGTACCTCA
CTCACAAGTAGTGGTCAGCCTAAAAATGAAGGCACTGGAATAATTGATGATGATTGGATT
GCAAACACTATCGCAAAAGCTGCTGCTGTTGCAGCCTCTAAAGAAGCTGATTCTTCTGAA
GCATCCATGACAAAAGAGCAGAAGCTGAAGGCTGAGAGGCTTAGACGTGCAAAGATGTTT
ACCTCTATTATTAAGAGTGGTGGCAGCAAGATGGCTGATTTGTCAACTTCAGCTGATCAA
ACTAATGAAGCTGGAAGGGCCTCTCCTGGTGATTTGAACTTATCTGAGTCTGATCCACAA
CCATCAGCTAAGGAACGTGAAGGTAGCTCTGTGCCATTTGAACGTGAAGGCTCTAATCTG
GCCAAGCAGGAGAAAGACTCTGATGACGAACGGAACAGGGCAAGGAAGTATAGGAAAAAA
CATCACCCAGAATCTGACGAGGAGAACTATGATTCAGAGGAGAGCTATAAACACTCTAGG
AAGAAGCACCGTTCAGAGGATTCAAGAGCTCATACTAGTGATGTTCACAAACATAAGCTC
AAGAGACACTCCAAGGATCTGGAACCCAGGCATCATAGGCACCGTGATAGCTCTTCAGAA
GATGAGCATGAGCACAGGAGCTCCAAGTCAAGGCATCGTCACAGGGATGACTATCACTAT
CACGAGGATGATGAGCATAGGAGTTCACATAGACACCAGAGGGACCACCGTTCCAGTTCA
AAAAGGAAAAAGGACGATGACCGAGATAAGAGCAAACAAACTATAGTTCTCCCAGAAGTC
TCCCAGAACCAGGAAAAGCCCCCTGGTGACACTGCTCAATCCTCCCAGGCAACAACTGAA
GTGCCGAGTGAGTTGAGAGCAAAAATCAGAGCAATGTTGCTAGAAACACTGTAA

Peptide Sequence

PEP ID

Os01t0698100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:28885452:28890777:1 gene:Os01g0698100 transcript:Os01t0698100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:SWAP/Surp domain containing protein. (Os01t0698100-01);Similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein. (Os01t0698100-02)
Sequence

MDLEIVGRHALLFDDDPTAEVVNSGGSLVPWAAVGADDLLLDRHDVRHLLDRVPPRPRRS
YSAALLSAPSLDGVSEAELDRERFLDLTADDFGGEGSQDAVSSGNGTDTGWADYNSVPFS
YGSTAGSDDPNNLSTYYCPSFPVPDRLLNKLPPSEKVHQIIARTALFVSEHGGQSEIVLR
VKQGSNPTFGFLMPDHHLHSYFRYLVDHPQLLKDGLDADSNKGCKTANSESGHDASSGGA
LSLLGAVYESGDEDEGMLPPSPKSTVPGKDVVVHEQGHESSVSAIHCNEETRDGQKATAA
ATVAAKDKSILTKKNPMITGSSLLAARLEKAKDAMMASSTSDVSDTKVVILEPPSFLKRT
MEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSNPYHPYYLKLLEETQESKSRGGSSE
PKDRKSSSEHKDRRSSSEQKDRRSPSERKGSNHGKGESKSKKRSSTSKDASSPDRSSAEP
SEKQLYDKHKQGKGKFHMIISGAKKEPPRNVTADEAAAIVMAATRGFGPANIQTNTLKDT
SGIGQTRGDNGHTSSFGSFSSLQDPDVPSKPVSNSEACTSLTSSGQPKNEGTGIIDDDWI
ANTIAKAAAVAASKEADSSEASMTKEQKLKAERLRRAKMFTSIIKSGGSKMADLSTSADQ
TNEAGRASPGDLNLSESDPQPSAKEREGSSVPFEREGSNLAKQEKDSDDERNRARKYRKK
HHPESDEENYDSEESYKHSRKKHRSEDSRAHTSDVHKHKLKRHSKDLEPRHHRHRDSSSE
DEHEHRSSKSRHRHRDDYHYHEDDEHRSSHRHQRDHRSSSKRKKDDDRDKSKQTIVLPEV
SQNQEKPPGDTAQSSQATTEVPSELRAKIRAMLLETL

Transcript Sequence

Transcript ID

Os01t0698100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:28885452:28890777:1 gene:Os01g0698100 gene_biotype:protein_coding transcript_biotype:protein_coding description:SWAP/Surp domain containing protein. (Os01t0698100-01);Similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein. (Os01t0698100-02)
Sequence

AGAACTCCAATACCCCATCGAGCCCCGGAATAGTACTCCGCCCGCCTTGCGGAAACAAAT
CGAAGAAGAAGAAGGAAGACGCAGCCGCGTGCCCCCCCATCCATGGATCTGGAGATCGTG
GGCCGGCACGCGCTGCTGTTCGACGACGACCCGACGGCGGAGGTCGTCAACTCCGGCGGC
TCCCTCGTCCCCTGGGCCGCCGTCGGCGCGGACGACCTCCTCCTCGACCGCCACGACGTC
CGGCACCTGCTCGACCGCGTGCCTCCTCGCCCCCGCCGCTCCTACTCCGCGGCCCTCCTC
TCTGCCCCCTCTCTGGATGGCGTCTCCGAGGCTGAACTCGACCGCGAGCGCTTCCTCGAC
CTCACCGCCGACGATTTCGGCGGCGAGGGCTCTCAAGATGCGGTCTCTTCAGGAAATGGG
ACAGATACAGGTTGGGCTGATTATAATTCTGTCCCTTTCTCATATGGGAGTACTGCTGGT
TCAGATGATCCAAATAATTTGAGCACATATTATTGCCCATCTTTTCCCGTGCCTGACAGA
TTGTTGAATAAGCTGCCTCCTTCTGAGAAGGTTCATCAAATTATTGCAAGAACTGCTCTA
TTTGTCAGTGAGCATGGGGGCCAGTCAGAGATTGTGTTAAGGGTGAAACAGGGTAGTAAT
CCAACATTTGGTTTCTTGATGCCTGACCATCATCTCCACAGCTACTTCCGGTACCTTGTA
GATCATCCTCAGTTGTTGAAAGATGGTCTAGATGCTGATTCAAACAAGGGCTGCAAAACT
GCCAATAGTGAGAGTGGGCATGATGCATCATCAGGCGGGGCTTTGTCATTGCTTGGGGCT
GTCTATGAGTCTGGAGATGAGGATGAAGGCATGCTTCCGCCTAGTCCAAAAAGCACGGTT
CCTGGAAAAGACGTGGTTGTGCATGAGCAAGGTCATGAAAGCTCTGTATCTGCTATACAT
TGCAACGAAGAAACACGGGATGGTCAGAAAGCAACGGCAGCAGCTACTGTTGCAGCTAAA
GATAAATCTATTTTGACTAAGAAGAACCCAATGATTACTGGCAGCAGCCTTCTTGCTGCT
CGCCTAGAGAAGGCCAAAGATGCCATGATGGCATCAAGTACGTCAGATGTTTCTGACACA
AAAGTTGTGATTCTGGAACCACCATCTTTCTTGAAGCGTACAATGGAGAAAATAGTTGAA
TTTATTATCAGGAATGGGAAAGAGTTTGAAGGAAAACTCATTGAGCAAGACAGAACAACA
GGAAGGTTTCCATTTCTTCTGCCATCTAATCCATATCACCCGTATTATCTGAAGCTTCTC
GAGGAAACTCAAGAGTCCAAGTCCCGTGGTGGTTCTTCAGAGCCCAAAGACAGAAAAAGC
TCTTCAGAGCACAAAGACCGAAGAAGCTCTTCAGAGCAGAAAGACAGAAGAAGCCCTTCA
GAGCGCAAAGGTAGTAATCATGGTAAGGGAGAAAGTAAAAGCAAGAAACGGTCAAGTACT
AGCAAGGATGCCAGTTCTCCTGATAGAAGCTCTGCTGAGCCGTCAGAGAAGCAGCTCTAT
GACAAACACAAACAAGGGAAGGGAAAGTTCCACATGATCATTAGTGGGGCCAAGAAGGAA
CCTCCTCGGAATGTCACTGCAGATGAAGCTGCTGCTATTGTTATGGCAGCTACTCGTGGA
TTTGGCCCTGCCAATATTCAAACAAACACACTGAAGGACACTAGTGGAATTGGTCAGACC
CGTGGAGATAATGGACATACTTCAAGCTTTGGAAGTTTCTCCTCTTTACAGGACCCAGAT
GTACCATCCAAACCTGTTTCAAATAGTGAGGCATGTACCTCACTCACAAGTAGTGGTCAG
CCTAAAAATGAAGGCACTGGAATAATTGATGATGATTGGATTGCAAACACTATCGCAAAA
GCTGCTGCTGTTGCAGCCTCTAAAGAAGCTGATTCTTCTGAAGCATCCATGACAAAAGAG
CAGAAGCTGAAGGCTGAGAGGCTTAGACGTGCAAAGATGTTTACCTCTATTATTAAGAGT
GGTGGCAGCAAGATGGCTGATTTGTCAACTTCAGCTGATCAAACTAATGAAGCTGGAAGG
GCCTCTCCTGGTGATTTGAACTTATCTGAGTCTGATCCACAACCATCAGCTAAGGAACGT
GAAGGTAGCTCTGTGCCATTTGAACGTGAAGGCTCTAATCTGGCCAAGCAGGAGAAAGAC
TCTGATGACGAACGGAACAGGGCAAGGAAGTATAGGAAAAAACATCACCCAGAATCTGAC
GAGGAGAACTATGATTCAGAGGAGAGCTATAAACACTCTAGGAAGAAGCACCGTTCAGAG
GATTCAAGAGCTCATACTAGTGATGTTCACAAACATAAGCTCAAGAGACACTCCAAGGAT
CTGGAACCCAGGCATCATAGGCACCGTGATAGCTCTTCAGAAGATGAGCATGAGCACAGG
AGCTCCAAGTCAAGGCATCGTCACAGGGATGACTATCACTATCACGAGGATGATGAGCAT
AGGAGTTCACATAGACACCAGAGGGACCACCGTTCCAGTTCAAAAAGGAAAAAGGACGAT
GACCGAGATAAGAGCAAACAAACTATAGTTCTCCCAGAAGTCTCCCAGAACCAGGAAAAG
CCCCCTGGTGACACTGCTCAATCCTCCCAGGCAACAACTGAAGTGCCGAGTGAGTTGAGA
GCAAAAATCAGAGCAATGTTGCTAGAAACACTGTAAATCTGTAATACCCTGTGGGGATTA
TGCTGTACAATGGGATAATGTAGCCAACTCTCCTTGTTCAGC