Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0685200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:28242906:28246259:-1 gene:Os01g0685200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to anti-silencing protein 1. (Os01t0685200-01)
Sequence

ATGAGCGTGATCGACATCCTGACGCGGGTGGACGCCATCTGCCAGAAGTACGGCAGGTAC
GACGCCGAGAAGCTCCACGGCTCCGGCGTCGCCGGCGAGGACCCCTTCGCGCGCCTCTAC
GCCTCGGTCGACGCTGACCTCAACGAATGCCTCGAGAAAGCGGAGGCGGCGAAGCAGGAG
AAGAACCGCGCCACGGTGGTCGCGCTGAACGCGGAGATCCGCGGAACGAAGGCCAAGCTC
CTCGAGGAGGATCTGCCCAAGCTGCAGCGGCTCGCCCTGAAGAAGGTTAAAGGGCTTTCA
AAAGAAGAACTTGCAATCCGTGGTGATCTGGTTACTGCCTTACCTGATAGGATTCAGTCA
ATACCAGATGGAAGTGCTACATCATCAAAGAAAACTGGATTATGGGGATCTTCTGGATCT
CGTGCAGGAACAGGGATTAAGTTTGACTCAACATATGATCTGGAGTGGAAGCTTATATAT
GTTGGATCGGCTGAGGATGAAAATTATGATCAGCTGCTTGAGAGTGTGCTTGTTGGCCCT
GTGAATGTTGGGACATACCGTTTTGTTCTCCAGGCTGATCCTCCTGACCCGTCAAAGATC
CGTAAGGAAGACATAATTGGTGTTATTGTGCTGCTATTAACTTGTTCCTACATGGGTCAA
GAGTTCATCAGAGTAGGTTACTATGTGAACAATGACAACGATGATGAGCAGCTTCGGGAG
GAGCCTCCTGCGAAGCTGCTGATTGACCGGGTGCAGAGGAACATATTGGCAGACAAGCCC
AGCGTCACCAAGTTCCCCATCAATTTCCATCCTGAAACCAGTGCAGGCGCAGGACAAGAG
CAGCAGCAGCAACAGCAATCTGGTTCACCTGAAAATCACCCAAACCAAGGTAGCAAGCCC
AACCCTGATCAATGA

Peptide Sequence

PEP ID

Os01t0685200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:28242906:28246259:-1 gene:Os01g0685200 transcript:Os01t0685200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to anti-silencing protein 1. (Os01t0685200-01)
Sequence

MSVIDILTRVDAICQKYGRYDAEKLHGSGVAGEDPFARLYASVDADLNECLEKAEAAKQE
KNRATVVALNAEIRGTKAKLLEEDLPKLQRLALKKVKGLSKEELAIRGDLVTALPDRIQS
IPDGSATSSKKTGLWGSSGSRAGTGIKFDSTYDLEWKLIYVGSAEDENYDQLLESVLVGP
VNVGTYRFVLQADPPDPSKIRKEDIIGVIVLLLTCSYMGQEFIRVGYYVNNDNDDEQLRE
EPPAKLLIDRVQRNILADKPSVTKFPINFHPETSAGAGQEQQQQQQSGSPENHPNQGSKP
NPDQ

Transcript Sequence

Transcript ID

Os01t0685200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:28242906:28246259:-1 gene:Os01g0685200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to anti-silencing protein 1. (Os01t0685200-01)
Sequence

GGAGCCAAGCTGTGCGGCCACCCGCCCAGGCGGCCCGGCCGCCCTGCCAACCTCCTCCAT
CGCTTGATCACCATCACCACCCCGCACCTCATCGCCGCCGTCTCACCCCGCCCTCCCCAA
CCGCCGTCCGGTCAGCGCAACCGACCACTCCCACCAGCCACGGCGGCGAAGCGGAGGCGG
GGAAGTAGTAGAAGAAGATGAGCGTGATCGACATCCTGACGCGGGTGGACGCCATCTGCC
AGAAGTACGGCAGGTACGACGCCGAGAAGCTCCACGGCTCCGGCGTCGCCGGCGAGGACC
CCTTCGCGCGCCTCTACGCCTCGGTCGACGCTGACCTCAACGAATGCCTCGAGAAAGCGG
AGGCGGCGAAGCAGGAGAAGAACCGCGCCACGGTGGTCGCGCTGAACGCGGAGATCCGCG
GAACGAAGGCCAAGCTCCTCGAGGAGGATCTGCCCAAGCTGCAGCGGCTCGCCCTGAAGA
AGGTTAAAGGGCTTTCAAAAGAAGAACTTGCAATCCGTGGTGATCTGGTTACTGCCTTAC
CTGATAGGATTCAGTCAATACCAGATGGAAGTGCTACATCATCAAAGAAAACTGGATTAT
GGGGATCTTCTGGATCTCGTGCAGGAACAGGGATTAAGTTTGACTCAACATATGATCTGG
AGTGGAAGCTTATATATGTTGGATCGGCTGAGGATGAAAATTATGATCAGCTGCTTGAGA
GTGTGCTTGTTGGCCCTGTGAATGTTGGGACATACCGTTTTGTTCTCCAGGCTGATCCTC
CTGACCCGTCAAAGATCCGTAAGGAAGACATAATTGGTGTTATTGTGCTGCTATTAACTT
GTTCCTACATGGGTCAAGAGTTCATCAGAGTAGGTTACTATGTGAACAATGACAACGATG
ATGAGCAGCTTCGGGAGGAGCCTCCTGCGAAGCTGCTGATTGACCGGGTGCAGAGGAACA
TATTGGCAGACAAGCCCAGCGTCACCAAGTTCCCCATCAATTTCCATCCTGAAACCAGTG
CAGGCGCAGGACAAGAGCAGCAGCAGCAACAGCAATCTGGTTCACCTGAAAATCACCCAA
ACCAAGGTAGCAAGCCCAACCCTGATCAATGAAGTGCTAGTCCCGCTACCCGCATAAAAA
CCCGCTTGTTAGTGTATTTTCCACATGGTAATACAAAATTTAG