Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0678500-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:27906660:27920895:-1 gene:Os01g0678500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TWO-PORE CHANNEL 1 description:Voltage-gated Ca2+ channel protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-01);Voltage-gated Ca2+ channel protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-02)
Sequence	ATGAGGGAGAGGGGAGAGATGAGGGAGGCGAAGGCGCCTCTGATCGCGGAGGCGGCGGAG CACATATCCCATTCCCACGGCTCCGGGTCGTCCGGCACCGGCAGCCACACCAGCGGCGGC GGCGGCGGGTGGAGGGGCTCGAGGCAGTACCAGCGCCGCTCGGACGCCCTCGCCTACGGC AACCGGTACCAGAAGGCGGCCGCCCTCGTCGACCTCGCAGAAGATGGTGTGGGTATCCCT GAGGATGTCTTGAATGACACAAGGTTTGAGAGGGCTATGAGATTCTATTTTGTGTATCTC CGGTTGGATTGGCTGTGGTCACTTAACCTATTTGCTTTGATTCTTTTGAATTTTCTCGAG AAGCCTCTCTGGTGCCGGGGATATTCTCAACATGCTTGTGATCAAAGGGATCTTTACTTT CTGGGGCAGTTGCCATACTTGAGCAAAACTGAATCTCTCATATATGAGGGGCTCACACTT GTTATTCTTGTAATGGATATCTTCTATCCACTGTCCTATGAAGGTTTAAACCTATTCTGG AAGAACACAATAAATAAACTGAAGGTTCTTCTTCTCTTCATCTTAGCATGTGACATACTG GTGTTTGCATTTAGTCCCCAACCTTTCAGAGTAGCTCCTTACATCCGTGTTGCGTTTCTA ATAATGAATATCAGGGAACTGCGAATGTGTGCTGTTACACTGGTTGGTATGGTTGGGACA TACCTTAATGTTTTGGCCCTTTCACTATTGTTCCTCTTATTCGCAAGCTGGCTAGCTTAT GTAACATTTGAGGATACACCACAAGGAAAGACTGTTTTCTCGTCATATGGTACCACGTTA TATCAGATGTTTATTCTCTTCACCACCTCCAATAATCCTGATGTATGGGTTCCTGCTTAT AAGAGCTCTCGTTGGTCCTCACTATTTTTTATTGTCTACGTACTTTTGGGAGTTTACTTC CTAACAAATTTAATTCTTGCTGTCATTTATGATAGCTTTAAGGAGCAGCTAGCAAAGCAA GTTTCTCAGGCAGACTGTACAAGGAAAAGTATACTAGAGAAGGCATTTGGTATCATTGAT GCTACTGGTCAGGGTTATCTCAACAAAGAACAGTGCCTATCATTACTAGATGAGCTCAAC AAATACAGATCGTTACCTAAAACCTCAAGGGAAGATTTTGAATTAATTTTTGCCGAGCTT GATCAGAGTGGTGATTTTAAGGTTACCTCTGAAGAATTTGCTACACTGTGCAATACCATT GCAATAAAATTCCAGAAAGAACCACCTCCATCCTATCTCGAGAAGTATCCATCTTTCTAT CATTCAGCACTGTGTGAATGGTTGAAATCTTTTGTGCGGAGCCCACTGTTTGAGTATATT GTTATTTTTGTTCTTCTGATGAATCTAGTCGCTGTCATTATTGAAACAACGCTGGATATA GAAAACAGCTCCTCGCAGAAAGTGTGGCAAGAAGTTGAGTTTGTCTTTGGATGGATTTAC GTTATAGAGATGGCACTCAAAATATTTTCATTAGGATTTGGTGCCTACTGGATGGAAGGT CAAAACAAGTTTGATTTTGTGCTTACTTGGACTATATTTATTGGAGAGACTCTAACATTT GCCTTCCCATCGAAGCTTTCTTTTCTTTCAAATGGAGAATGGATTCGGTACCTTCTTCTT GGAAGGATGTTACGCTTGACAAGAATTCTGTTGCAAGTTCGGCGTTTCAGAGCATTTGTT GCAACATTCTTTACTCTGATGTCTAGCTTGATGCCATATTTGGGGATTGTATTCTGCACC CTTTGCATTTACTGCTCCCTTGGTTTGCAGATATTTGGGGGCATTGTGTATGCAGGAAAT CCAACACTAGAAGAAACCGATCTCTTCAGTAACGACTATCTTCTTTTTAACTTCAATGAC TATCCAAGTGGTATGGTAACTCTGTTCAATTTGTTAGTGATGGGCAATTGGCAAGCTTGG ATGGAGAGCTACAGGCAATTGACTGGAAGTTATTGGAGCCTGATTTATTTTGTCAGCTTT TACCTCATTTCAGTATTACTGCTGCTTAATCTGATTGTAGCATTTGTGTTGGAGGCATTT TTTGCTGAGATGGAACTGGAGAAAGATGGCGAAGCTGATATCCAGGATCCTACTTTGGAA GGAAGAAACAGGCGGCGATCTGTGCGTGTGAGGACAAAGGGGACCATGGTTGATATTCTT CTTCACCATATGTTGAGCAATGAACTTGATGGATCTCAAAACCGTGACCAATAG

Peptide Sequence

PEP ID	Os01t0678500-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:27906660:27920895:-1 gene:Os01g0678500 transcript:Os01t0678500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TWO-PORE CHANNEL 1 description:Voltage-gated Ca2+ channel protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-01);Voltage-gated Ca2+ channel protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-02)
Sequence	MRERGEMREAKAPLIAEAAEHISHSHGSGSSGTGSHTSGGGGGWRGSRQYQRRSDALAYG NRYQKAAALVDLAEDGVGIPEDVLNDTRFERAMRFYFVYLRLDWLWSLNLFALILLNFLE KPLWCRGYSQHACDQRDLYFLGQLPYLSKTESLIYEGLTLVILVMDIFYPLSYEGLNLFW KNTINKLKVLLLFILACDILVFAFSPQPFRVAPYIRVAFLIMNIRELRMCAVTLVGMVGT YLNVLALSLLFLLFASWLAYVTFEDTPQGKTVFSSYGTTLYQMFILFTTSNNPDVWVPAY KSSRWSSLFFIVYVLLGVYFLTNLILAVIYDSFKEQLAKQVSQADCTRKSILEKAFGIID ATGQGYLNKEQCLSLLDELNKYRSLPKTSREDFELIFAELDQSGDFKVTSEEFATLCNTI AIKFQKEPPPSYLEKYPSFYHSALCEWLKSFVRSPLFEYIVIFVLLMNLVAVIIETTLDI ENSSSQKVWQEVEFVFGWIYVIEMALKIFSLGFGAYWMEGQNKFDFVLTWTIFIGETLTF AFPSKLSFLSNGEWIRYLLLGRMLRLTRILLQVRRFRAFVATFFTLMSSLMPYLGIVFCT LCIYCSLGLQIFGGIVYAGNPTLEETDLFSNDYLLFNFNDYPSGMVTLFNLLVMGNWQAW MESYRQLTGSYWSLIYFVSFYLISVLLLLNLIVAFVLEAFFAEMELEKDGEADIQDPTLE GRNRRRSVRVRTKGTMVDILLHHMLSNELDGSQNRDQ

Transcript Sequence

Transcript ID	Os01t0678500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:27906660:27920895:-1 gene:Os01g0678500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TWO-PORE CHANNEL 1 description:Voltage-gated Ca2+ channel protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-01);Voltage-gated Ca2+ channel protein, Elicitor-induced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-02)
Sequence	CTTCTACTTCCGCTTCCGCTCGCGGTTCCAGATCTCTCCCTGCACATCTGCATCCACTCA CACTCGAGGGAGAGGGAGAGGGGGAGAGATGAGGGAGAGGGGAGAGATGAGGGAGGCGAA GGCGCCTCTGATCGCGGAGGCGGCGGAGCACATATCCCATTCCCACGGCTCCGGGTCGTC CGGCACCGGCAGCCACACCAGCGGCGGCGGCGGCGGGTGGAGGGGCTCGAGGCAGTACCA GCGCCGCTCGGACGCCCTCGCCTACGGCAACCGGTACCAGAAGGCGGCCGCCCTCGTCGA CCTCGCAGAAGATGGTGTGGGTATCCCTGAGGATGTCTTGAATGACACAAGGTTTGAGAG GGCTATGAGATTCTATTTTGTGTATCTCCGGTTGGATTGGCTGTGGTCACTTAACCTATT TGCTTTGATTCTTTTGAATTTTCTCGAGAAGCCTCTCTGGTGCCGGGGATATTCTCAACA TGCTTGTGATCAAAGGGATCTTTACTTTCTGGGGCAGTTGCCATACTTGAGCAAAACTGA ATCTCTCATATATGAGGGGCTCACACTTGTTATTCTTGTAATGGATATCTTCTATCCACT GTCCTATGAAGGTTTAAACCTATTCTGGAAGAACACAATAAATAAACTGAAGGTTCTTCT TCTCTTCATCTTAGCATGTGACATACTGGTGTTTGCATTTAGTCCCCAACCTTTCAGAGT AGCTCCTTACATCCGTGTTGCGTTTCTAATAATGAATATCAGGGAACTGCGAATGTGTGC TGTTACACTGGTTGGTATGGTTGGGACATACCTTAATGTTTTGGCCCTTTCACTATTGTT CCTCTTATTCGCAAGCTGGCTAGCTTATGTAACATTTGAGGATACACCACAAGGAAAGAC TGTTTTCTCGTCATATGGTACCACGTTATATCAGATGTTTATTCTCTTCACCACCTCCAA TAATCCTGATGTATGGGTTCCTGCTTATAAGAGCTCTCGTTGGTCCTCACTATTTTTTAT TGTCTACGTACTTTTGGGAGTTTACTTCCTAACAAATTTAATTCTTGCTGTCATTTATGA TAGCTTTAAGGAGCAGCTAGCAAAGCAAGTTTCTCAGGCAGACTGTACAAGGAAAAGTAT ACTAGAGAAGGCATTTGGTATCATTGATGCTACTGGTCAGGGTTATCTCAACAAAGAACA GTGCCTATCATTACTAGATGAGCTCAACAAATACAGATCGTTACCTAAAACCTCAAGGGA AGATTTTGAATTAATTTTTGCCGAGCTTGATCAGAGTGGTGATTTTAAGGTTACCTCTGA AGAATTTGCTACACTGTGCAATACCATTGCAATAAAATTCCAGAAAGAACCACCTCCATC CTATCTCGAGAAGTATCCATCTTTCTATCATTCAGCACTGTGTGAATGGTTGAAATCTTT TGTGCGGAGCCCACTGTTTGAGTATATTGTTATTTTTGTTCTTCTGATGAATCTAGTCGC TGTCATTATTGAAACAACGCTGGATATAGAAAACAGCTCCTCGCAGAAAGTGTGGCAAGA AGTTGAGTTTGTCTTTGGATGGATTTACGTTATAGAGATGGCACTCAAAATATTTTCATT AGGATTTGGTGCCTACTGGATGGAAGGTCAAAACAAGTTTGATTTTGTGCTTACTTGGAC TATATTTATTGGAGAGACTCTAACATTTGCCTTCCCATCGAAGCTTTCTTTTCTTTCAAA TGGAGAATGGATTCGGTACCTTCTTCTTGGAAGGATGTTACGCTTGACAAGAATTCTGTT GCAAGTTCGGCGTTTCAGAGCATTTGTTGCAACATTCTTTACTCTGATGTCTAGCTTGAT GCCATATTTGGGGATTGTATTCTGCACCCTTTGCATTTACTGCTCCCTTGGTTTGCAGAT ATTTGGGGGCATTGTGTATGCAGGAAATCCAACACTAGAAGAAACCGATCTCTTCAGTAA CGACTATCTTCTTTTTAACTTCAATGACTATCCAAGTGGTATGGTAACTCTGTTCAATTT GTTAGTGATGGGCAATTGGCAAGCTTGGATGGAGAGCTACAGGCAATTGACTGGAAGTTA TTGGAGCCTGATTTATTTTGTCAGCTTTTACCTCATTTCAGTATTACTGCTGCTTAATCT GATTGTAGCATTTGTGTTGGAGGCATTTTTTGCTGAGATGGAACTGGAGAAAGATGGCGA AGCTGATATCCAGGATCCTACTTTGGAAGGAAGAAACAGGCGGCGATCTGTGCGTGTGAG GACAAAGGGGACCATGGTTGATATTCTTCTTCACCATATGTTGAGCAATGAACTTGATGG ATCTCAAAACCGTGACCAATAGCTTATCTTCATGGTCTTTTTTTTTTTTAAAAAAAAGGC CCTGCAGGAAGAAAGCAAGAACAGAAAAAAAAAAGGAAATGATTAGAGCCGGTTCTCGAG CATGGAGTTATGTTTTGTTATGTCAGGTACTCAGGTGCAAAGGAATCTTGGTGAGGTGAT GGAAAGGACTCTGCTTGTCATACTTTAGTTGTCAAGGAGAACAGCAGATGTGTTCTCTTT CTGCTCCAAAGGAGACCTTAAAGGAGCTTTTTTTTAAAAGTAAATATTGTAGGAGATTCT CCTACAGTGCATATATATTTATACAAAGGAGCTCTTTTTGTATAGGATTAAAATGTGCTA ATGGTTCTGGTGATTTTCTTTTTTGAAAACTTTACAGGTTATTATAGCCATAATACTCCA CATTTCCTTATTGTTATACTATATACACGTTATAAGTTTTG