Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0677500-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:27860530:27862131:1 gene:Os01g0677500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN-CONJUGATING ENZYME 39 description:Similar to ubiquitin-conjugating enzyme E2. (Os01t0677500-00)
Sequence

ATGTCACTTGCCGATTACCTCAAGCTGGAGGGAAGCGATATCAACTTAAACATAAATACA
TATTATTACTTGGTTGCACTTGGTGAGGGAGGTATTGTTGTAGAGGGACAAACTTCTGCT
GAGAAGCCGCACCAGCATAAACAGATGAAGCATGTGGACCCTAAAATTGATGAAAAATAC
GTGGAATTTAAGCAATTTGATATTGTAGGTGATCACTCTGATCACTTCTATTCGAACCCA
AGAGAAAGGAAGGTTCAAGTAGTTAATGAGCCTGGGAAGGACTGGGTGAAGCGGATTCAA
CATGAATGGAAAGTCCTAGAGAAAGATTTGCCAGATAATATATTTGTAAGAGTTTATGAG
GATAGGTTGGAGCTGCTTAGAGCAGTCATTATTGGACCATCAGGCACTCCTTACCATGAC
GGGCTATTCTTTTTTGATGTTTATTTCCCTCCCCAATATCCTAGAAACCCTCTGCTAGTG
ATCTATCACTCTGGAGGTATGCGGCTTAATCCAAATCTCTATGCCTGTGGGAAAGTCTGT
CTCAGTTTGTTAAACACATGGCCTGGTGATGGATGTGAGAAGTGGAACCCATCCAATTCA
ACGCTACAAGTCCTAGTCTCCATTCAAGCCTTGGTATTAAATGCAAAACCTTATTTTAAT
GAACCTGGTTTCGAAAGTTATGCTAATACACCTCGGGCAGAGAAGAAGTCTATAGCTTAT
AATCAGGAGACTTTTCTGTTGTCCTGCAAAACAATGTTGTATTCTCTTCGCAATCCACCA
AAGCATTTTGACGACTTCATTATTGGTCATTTTCACAAATATGGGCATAGTATCCTCATA
GGATGCAATGCCTATATGGATGGTGCCCAAGTTGGAAGCATTATAGGAGGGGTGAAGGCT
ATTGACAAAGGCAACAAAGGCTGCTCAACAAAGTTTAAGGGTTCATTGAAGAAATTATTT
GAGGAACTTATGATGGAATTCATTGGTATAGGTGTTGATTGTCATGAATTCATGATAGAC
ACCACATTGAAGCTCTAA

Peptide Sequence

PEP ID

Os01t0677500-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:27860530:27862131:1 gene:Os01g0677500 transcript:Os01t0677500-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN-CONJUGATING ENZYME 39 description:Similar to ubiquitin-conjugating enzyme E2. (Os01t0677500-00)
Sequence

MSLADYLKLEGSDINLNINTYYYLVALGEGGIVVEGQTSAEKPHQHKQMKHVDPKIDEKY
VEFKQFDIVGDHSDHFYSNPRERKVQVVNEPGKDWVKRIQHEWKVLEKDLPDNIFVRVYE
DRLELLRAVIIGPSGTPYHDGLFFFDVYFPPQYPRNPLLVIYHSGGMRLNPNLYACGKVC
LSLLNTWPGDGCEKWNPSNSTLQVLVSIQALVLNAKPYFNEPGFESYANTPRAEKKSIAY
NQETFLLSCKTMLYSLRNPPKHFDDFIIGHFHKYGHSILIGCNAYMDGAQVGSIIGGVKA
IDKGNKGCSTKFKGSLKKLFEELMMEFIGIGVDCHEFMIDTTLKL

Transcript Sequence

Transcript ID

Os01t0677500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:27860530:27862131:1 gene:Os01g0677500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN-CONJUGATING ENZYME 39 description:Similar to ubiquitin-conjugating enzyme E2. (Os01t0677500-00)
Sequence

ATGTCACTTGCCGATTACCTCAAGCTGGAGGGAAGCGATATCAACTTAAACATAAATACA
TATTATTACTTGGTTGCACTTGGTGAGGGAGGTATTGTTGTAGAGGGACAAACTTCTGCT
GAGAAGCCGCACCAGCATAAACAGATGAAGCATGTGGACCCTAAAATTGATGAAAAATAC
GTGGAATTTAAGCAATTTGATATTGTAGGTGATCACTCTGATCACTTCTATTCGAACCCA
AGAGAAAGGAAGGTTCAAGTAGTTAATGAGCCTGGGAAGGACTGGGTGAAGCGGATTCAA
CATGAATGGAAAGTCCTAGAGAAAGATTTGCCAGATAATATATTTGTAAGAGTTTATGAG
GATAGGTTGGAGCTGCTTAGAGCAGTCATTATTGGACCATCAGGCACTCCTTACCATGAC
GGGCTATTCTTTTTTGATGTTTATTTCCCTCCCCAATATCCTAGAAACCCTCTGCTAGTG
ATCTATCACTCTGGAGGTATGCGGCTTAATCCAAATCTCTATGCCTGTGGGAAAGTCTGT
CTCAGTTTGTTAAACACATGGCCTGGTGATGGATGTGAGAAGTGGAACCCATCCAATTCA
ACGCTACAAGTCCTAGTCTCCATTCAAGCCTTGGTATTAAATGCAAAACCTTATTTTAAT
GAACCTGGTTTCGAAAGTTATGCTAATACACCTCGGGCAGAGAAGAAGTCTATAGCTTAT
AATCAGGAGACTTTTCTGTTGTCCTGCAAAACAATGTTGTATTCTCTTCGCAATCCACCA
AAGCATTTTGACGACTTCATTATTGGTCATTTTCACAAATATGGGCATAGTATCCTCATA
GGATGCAATGCCTATATGGATGGTGCCCAAGTTGGAAGCATTATAGGAGGGGTGAAGGCT
ATTGACAAAGGCAACAAAGGCTGCTCAACAAAGTTTAAGGGTTCATTGAAGAAATTATTT
GAGGAACTTATGATGGAATTCATTGGTATAGGTGTTGATTGTCATGAATTCATGATAGAC
ACCACATTGAAGCTCTAA