Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0677000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:27840205:27842391:1 gene:Os01g0677000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA27 description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os01t0677000-01)
Sequence

ATGTGGCCTCTCCTCCTCCGCGCCGCCGTCGTCTACGCGGCGCTGCTCGCCGCCGGCGAG
GCGGACGGCTCCCACGATGTCCTCGACATCTTCGGCACGCGCTCCGAGAGCGACTACTAC
CGTAACGCGTTCCAGGGGAAGCAGGGGCAGGCGGTGCCGCTGCCGCGTGGAGGCGGCCTC
CGCCGCGAGCAGCAGGAGCTCGGCGCCGCGGGCCCGGGCGGTAGCGGGCTCTCGAAGGCG
CCGCCTCGGTCCGCGCCCAGCAAGGTGGCTCTGGACAGCCTGAAGCTCCCCGTGGACACC
TCCGCGGGCTTCGCTGGCGGGTGGAACCTGGTGAGCGAGAACTCCGGCGTGTCCGCCATG
CACCTGGTGGTCATGCAGCACGGCAAGGCCATAATGTTCGACACGTGCACGACGGGACGT
TCGCTGATGCGGCTGCCCCCGGGCAGATGCCGCCCTGACCCCCGGAGCAAGCAGCCCGGC
GCCATGGACTGCTGGGCGCACGCCGTGGAGTTCGACTACAACACCGGCGCGCTCCGCTCT
CTCAAGATCGTGACGGACACGTGGTGCTCGTCGGGGGCGTTCGACGCCGACGGCAACATG
GTGCAGACCGGCGGCTTCTTCGAAGGGGACAAGTCTGTCAGGTACCTGAGCGCATGCGGC
ACCTGCGACTGGAAGGAGTTTCCCAAGAGCCTTGCCGACGGAAGATGGTACGGGACGCAG
CTGGTGCTCCCGGACGGCAGTTTCATCGTGATCGGCGGCCGACGCGCGTTCAGCTACGAG
TTCGTCCCGGCGGCCGGCCGGGCAAACGCCAGGGCCACGCCTTTGCGTCTGCTCCGGGAC
ACCACCGACGACGTGGAGAACAACCTGTACCCCTTCGTCAACCTCCTCCCGGACGGGACC
CTCTTCATCTTCGCCAACGACCGCTCCATCGTGTTCAACTACAGGACCGGGCAGGTCGTA
CGCGAGCTTCCGATCCTCCCCGGCGGCTCCCGGAACTACCCTGCCTCCGCCATGTCGACG
CTTCTGCCCCTGGACCTCCGCAAAGGGGCCGGCCTTAGCGCGGAGGTCATCATCTGCGGC
GGCGCCACCAAGAATGCCTTCAAGCTCGGGGAGACCAGCACGTTCCCTCCCGCGCTCCGG
GACTGCGCGCGCATCAACCCGTCGAAACCCGGGGCGCGGTGGGCGCTCGACCAGATGCCC
TCGGGCCGCGTCATGGGCGACGTGCTGATCCTGCCCACCGGCGACCTGCTCATGCTGAAC
GGCGCCGCCAAGGGCTGCTCCGGCTGGGGGTTCGGCCGGCAGGCGTTGCTGAGCCCTGTG
CTGTACTCGCCGTATCTGCGGCGGGGCAAGCGGTTCCGCGTTCTGAACCCGTCGAACATC
CCACGGATGTACCACTCCACCAGCGCGCTTCTCCCCGACGCCACCGTGCTCGTGGCCGGC
AGCAACACCAACTCGGCCTACAACTTCAGCGGCGTGGACTTCCCGACCGAGGTGCGCGTC
GAGCGGTTCACCCCGCCGTACCTCAGCCCGCAGCTGTCCCCCAACCGGCCGGCGATCGAC
GCGGCGTCCGTCCCCGGCGACGGCATGCGGTACGGCGCCAGGTTCACGTTCCGGTTCACG
ACGCCCGCGCAGGGCGTGGGGCAGGGCGACTTCAAGGTGACCATGTACGCGCCGCCGTTC
ACGACGCATGGGTACTCCATGAACCAGCGGCTGCTGATACTGCCCGTCACGGCGTTCGCC
GCGCAGGGGCAGCGGCACACGGTCACCGTCGACGCGCCGCCCAAGCCGGAGCTCGCGCCG
CCGGGTTACTACATGGTGTACGTGGTGGCGAAGGGGGTGCCGAGCAAGGCTGCGTGGGTG
AAGATGCACAAGTAA

Peptide Sequence

PEP ID

Os01t0677000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:27840205:27842391:1 gene:Os01g0677000 transcript:Os01t0677000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA27 description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os01t0677000-01)
Sequence

MWPLLLRAAVVYAALLAAGEADGSHDVLDIFGTRSESDYYRNAFQGKQGQAVPLPRGGGL
RREQQELGAAGPGGSGLSKAPPRSAPSKVALDSLKLPVDTSAGFAGGWNLVSENSGVSAM
HLVVMQHGKAIMFDTCTTGRSLMRLPPGRCRPDPRSKQPGAMDCWAHAVEFDYNTGALRS
LKIVTDTWCSSGAFDADGNMVQTGGFFEGDKSVRYLSACGTCDWKEFPKSLADGRWYGTQ
LVLPDGSFIVIGGRRAFSYEFVPAAGRANARATPLRLLRDTTDDVENNLYPFVNLLPDGT
LFIFANDRSIVFNYRTGQVVRELPILPGGSRNYPASAMSTLLPLDLRKGAGLSAEVIICG
GATKNAFKLGETSTFPPALRDCARINPSKPGARWALDQMPSGRVMGDVLILPTGDLLMLN
GAAKGCSGWGFGRQALLSPVLYSPYLRRGKRFRVLNPSNIPRMYHSTSALLPDATVLVAG
SNTNSAYNFSGVDFPTEVRVERFTPPYLSPQLSPNRPAIDAASVPGDGMRYGARFTFRFT
TPAQGVGQGDFKVTMYAPPFTTHGYSMNQRLLILPVTAFAAQGQRHTVTVDAPPKPELAP
PGYYMVYVVAKGVPSKAAWVKMHK

Transcript Sequence

Transcript ID

Os01t0677000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:27840205:27842391:1 gene:Os01g0677000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA27 description:Galactose oxidase/kelch, beta-propeller domain containing protein. (Os01t0677000-01)
Sequence

ATCCTCCGCGACGCACATCGTCCGTCCCACCACGATGTGGCCTCTCCTCCTCCGCGCCGC
CGTCGTCTACGCGGCGCTGCTCGCCGCCGGCGAGGCGGACGGCTCCCACGATGTCCTCGA
CATCTTCGGCACGCGCTCCGAGAGCGACTACTACCGTAACGCGTTCCAGGGGAAGCAGGG
GCAGGCGGTGCCGCTGCCGCGTGGAGGCGGCCTCCGCCGCGAGCAGCAGGAGCTCGGCGC
CGCGGGCCCGGGCGGTAGCGGGCTCTCGAAGGCGCCGCCTCGGTCCGCGCCCAGCAAGGT
GGCTCTGGACAGCCTGAAGCTCCCCGTGGACACCTCCGCGGGCTTCGCTGGCGGGTGGAA
CCTGGTGAGCGAGAACTCCGGCGTGTCCGCCATGCACCTGGTGGTCATGCAGCACGGCAA
GGCCATAATGTTCGACACGTGCACGACGGGACGTTCGCTGATGCGGCTGCCCCCGGGCAG
ATGCCGCCCTGACCCCCGGAGCAAGCAGCCCGGCGCCATGGACTGCTGGGCGCACGCCGT
GGAGTTCGACTACAACACCGGCGCGCTCCGCTCTCTCAAGATCGTGACGGACACGTGGTG
CTCGTCGGGGGCGTTCGACGCCGACGGCAACATGGTGCAGACCGGCGGCTTCTTCGAAGG
GGACAAGTCTGTCAGGTACCTGAGCGCATGCGGCACCTGCGACTGGAAGGAGTTTCCCAA
GAGCCTTGCCGACGGAAGATGGTACGGGACGCAGCTGGTGCTCCCGGACGGCAGTTTCAT
CGTGATCGGCGGCCGACGCGCGTTCAGCTACGAGTTCGTCCCGGCGGCCGGCCGGGCAAA
CGCCAGGGCCACGCCTTTGCGTCTGCTCCGGGACACCACCGACGACGTGGAGAACAACCT
GTACCCCTTCGTCAACCTCCTCCCGGACGGGACCCTCTTCATCTTCGCCAACGACCGCTC
CATCGTGTTCAACTACAGGACCGGGCAGGTCGTACGCGAGCTTCCGATCCTCCCCGGCGG
CTCCCGGAACTACCCTGCCTCCGCCATGTCGACGCTTCTGCCCCTGGACCTCCGCAAAGG
GGCCGGCCTTAGCGCGGAGGTCATCATCTGCGGCGGCGCCACCAAGAATGCCTTCAAGCT
CGGGGAGACCAGCACGTTCCCTCCCGCGCTCCGGGACTGCGCGCGCATCAACCCGTCGAA
ACCCGGGGCGCGGTGGGCGCTCGACCAGATGCCCTCGGGCCGCGTCATGGGCGACGTGCT
GATCCTGCCCACCGGCGACCTGCTCATGCTGAACGGCGCCGCCAAGGGCTGCTCCGGCTG
GGGGTTCGGCCGGCAGGCGTTGCTGAGCCCTGTGCTGTACTCGCCGTATCTGCGGCGGGG
CAAGCGGTTCCGCGTTCTGAACCCGTCGAACATCCCACGGATGTACCACTCCACCAGCGC
GCTTCTCCCCGACGCCACCGTGCTCGTGGCCGGCAGCAACACCAACTCGGCCTACAACTT
CAGCGGCGTGGACTTCCCGACCGAGGTGCGCGTCGAGCGGTTCACCCCGCCGTACCTCAG
CCCGCAGCTGTCCCCCAACCGGCCGGCGATCGACGCGGCGTCCGTCCCCGGCGACGGCAT
GCGGTACGGCGCCAGGTTCACGTTCCGGTTCACGACGCCCGCGCAGGGCGTGGGGCAGGG
CGACTTCAAGGTGACCATGTACGCGCCGCCGTTCACGACGCATGGGTACTCCATGAACCA
GCGGCTGCTGATACTGCCCGTCACGGCGTTCGCCGCGCAGGGGCAGCGGCACACGGTCAC
CGTCGACGCGCCGCCCAAGCCGGAGCTCGCGCCGCCGGGTTACTACATGGTGTACGTGGT
GGCGAAGGGGGTGCCGAGCAAGGCTGCGTGGGTGAAGATGCACAAGTAAAAAAGAGCATA
CGTGAACCCCGCGCGCGTGGTGCTTTGCATGTCAACGGGAAACTATTAACTCCTGAGGAT
GTTCCCTCATT