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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0666200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:27236519:27239874:1 gene:Os01g0666200 gene_biotype:protein_coding transcript_biotype:protein_coding description:High mobility group, HMG1/HMG2 domain containing protein. (Os01t0666200-01)
Sequence

ATGAAGACGAGGTCGCAGACGGCGCCGAAGCCGCTGAAAACGGTGCGGCTGCCTCCTGTC
AAGCCGCGGCCCAAGCCGCCGCCGCCGCAGCCGCAGCCGCCGCCGTCCCGGAAGAAGGGG
CAGCCCCTCGTCGACCGGCGCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATG
GAGGATTTTCGGAAAACTTACAAGGAAGAAAATCCAAGTGTAAAATCAATGCAAGAAGTA
GGGAAGGCATGTGGCGAGAAATGGAATACAATGACATTTGAGGAAAGAGTGAAGTATTAT
GATATAGCAACCGAGAAGCGTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAA
AAGGAAAGCGGTGAATTGTCCGAGGAATCAGATTACGACTAG

Peptide Sequence

PEP ID

Os01t0666200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:27236519:27239874:1 gene:Os01g0666200 transcript:Os01t0666200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:High mobility group, HMG1/HMG2 domain containing protein. (Os01t0666200-01)
Sequence

MKTRSQTAPKPLKTVRLPPVKPRPKPPPPQPQPPPSRKKGQPLVDRRRPKKPPTAFFYFM
EDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKRAEYEKAVAEFDKK
KESGELSEESDYD

Transcript Sequence

Transcript ID

Os01t0666200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:27236519:27239874:1 gene:Os01g0666200 gene_biotype:protein_coding transcript_biotype:protein_coding description:High mobility group, HMG1/HMG2 domain containing protein. (Os01t0666200-01)
Sequence

CTTTCGCCGCTGCAAACCTCCGTCTCCTCCGGCTCCGGCTGCTCGGGGCCTAAACCCTCG
CCGCGTGTACTAAAAACCCCGGCGGCCCAGGCGGCGGAGGGATGAAGACGAGGTCGCAGA
CGGCGCCGAAGCCGCTGAAAACGGTGCGGCTGCCTCCTGTCAAGCCGCGGCCCAAGCCGC
CGCCGCCGCAGCCGCAGCCGCCGCCGTCCCGGAAGAAGGGGCAGCCCCTCGTCGACCGGC
GCCGCCCCAAGAAGCCGCCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGGAAAACTT
ACAAGGAAGAAAATCCAAGTGTAAAATCAATGCAAGAAGTAGGGAAGGCATGTGGCGAGA
AATGGAATACAATGACATTTGAGGAAAGAGTGAAGTATTATGATATAGCAACCGAGAAGC
GTGCAGAGTATGAGAAGGCGGTGGCTGAATTTGACAAGAAAAAGGAAAGCGGTGAATTGT
CCGAGGAATCAGATTACGACTAGAGGTGAACGTCGGGTAGTTGTTCCGATGGTTCACCCA
AGTAATTGGATGGACGAATCAATTGTATATTACAGAACTGAGGCACTGAGCTTTGTAATG
GAATCTATATATAGTCAGTTTCCTGCTCATTCTAGAGTGAACTATCGTCTTGTGATAAAG
TGATAGCTTTGGATCGAGTATTCGCTGGTACACCACCAGTGCTTGAAATAACT