Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0665300-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:27178705:27183822:-1 gene:Os01g0665300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CTD-phosphatase-like protein. (Os01t0665300-01);NLI interacting factor domain containing protein. (Os01t0665300-02)
Sequence	ATGCCAGCACTGAGGATGAAGAGGAACTTTGACGATGATGTTTTTAGGGATGAGTTTGAT TCCAAACCCACAAAATCTATGAAGATCTCACATTTTCAAGTCAGCGAACTAGAGCAGTCA GCTGTGTTGAACTTGCCTTATAAAGATCCCCACGATGAGCTGGATTTGACAACTCAGTTA GCTGGCCAGGACATTATGATCATGGAAGCTGCTAGTTTGGATGATGCTCTTGGAGGAGCA TCTTTGCTCAAGGATTTAATATCTGAGGTGGCAGTTTCACCAAATATGGAGAATGATATG TTAGTTAATTATGAAGACATCAGATCTCAGTTAAATGTAGTAAATTATTTTGACAAAGAT GAAGATGCAAATTCTGCATCATATAATAGCTGTACCGTTAATTGTCATGAAGAAAGCTGG GGCTCGAATGAGGGTTGCAGTCTGTTGGACATTTATAATCCTGATGATGCTTTCTCTTTC CTATTGGATACGCCCTCTGAGTTTCTGGGTAGTTTTACTGCATTATATGATGAAGTTGTA CCAATTGATTCATTGGTGAATATAAGTGGCCGATGTGGAGTATTCCCACTTACTGAGAGC ACTACAGAAGCCAGTATTGGTAATGAGCCATGCAGATCTGAGGGGGATATGCTATTTAGT AACTCAGAGGTGTTAGAGTGGCTCAATCCACATCTGGCTGAGGAGGATTTGCCTAATCTC GTTGATTTTACTGAGCTGAACTCACATGCTGTATCAAAGGAGCAAGGGGCCAGGAAGGTC ACTCTTGTACTTGATTTGGACGAAACCCTTGTTCATTCGACCACAGAGCAGTGTGATGAC TATGACTTTACCTTTCCAGTGTTCTTTGATATGAAGGAGCATATGGTTTATGTGAGGAAG AGACCACATCTCCACATGTTCCTCCAAAAAATGGCTGAGATGTTTGAGGTTGTTATATTC ACAGCCAGCCAAAGTGTTTATGCAGATCAGCTGCTTGACATCTTGGATCCAGAGAAAAAA CTGTTCTCTAGGCGTTATTTCCGGGAGTCATGTGTATTTACAAACACTAGCTACACGAAG GATCTGACAGTTGTTGGAGTTGACCTTGCTAAAGTTGTCATAATTGACAACACTCCGCAG GTTTTCCAGTTGCAAGTGAATAATGGTATACCCATAGAGAGTTGGTTTAGCGACGACTCT GATGAGGCATTACCTCAGCTGATTCCGTTCCTGGAGACCCTTGCTTCTGCGGATGATGTC CGACCCATAATTGCCAAGAAGTTTGGCGACAAAAAGGATATTGCTGAGATTTTCCAATAA

Peptide Sequence

PEP ID	Os01t0665300-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:27178705:27183822:-1 gene:Os01g0665300 transcript:Os01t0665300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CTD-phosphatase-like protein. (Os01t0665300-01);NLI interacting factor domain containing protein. (Os01t0665300-02)
Sequence	MPALRMKRNFDDDVFRDEFDSKPTKSMKISHFQVSELEQSAVLNLPYKDPHDELDLTTQL AGQDIMIMEAASLDDALGGASLLKDLISEVAVSPNMENDMLVNYEDIRSQLNVVNYFDKD EDANSASYNSCTVNCHEESWGSNEGCSLLDIYNPDDAFSFLLDTPSEFLGSFTALYDEVV PIDSLVNISGRCGVFPLTESTTEASIGNEPCRSEGDMLFSNSEVLEWLNPHLAEEDLPNL VDFTELNSHAVSKEQGARKVTLVLDLDETLVHSTTEQCDDYDFTFPVFFDMKEHMVYVRK RPHLHMFLQKMAEMFEVVIFTASQSVYADQLLDILDPEKKLFSRRYFRESCVFTNTSYTK DLTVVGVDLAKVVIIDNTPQVFQLQVNNGIPIESWFSDDSDEALPQLIPFLETLASADDV RPIIAKKFGDKKDIAEIFQ

Transcript Sequence

Transcript ID	Os01t0665300-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:27178705:27183822:-1 gene:Os01g0665300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to CTD-phosphatase-like protein. (Os01t0665300-01);NLI interacting factor domain containing protein. (Os01t0665300-02)
Sequence	TCTCTCTCCCCCCTTCTCCGTCTGCGTTGTGCTGCGCGAGCCCCCGGAGGCGAGGCGACT CCGCGTCGCCTTCCCCCCCGAGCGCGCGGCCGGCGAGAAGGGCGGGAGGCGCGGGCGGCG AGGTGCTCCTCTTCTCTCTCTGTGTCTCTCGTCGGCGACCTCGCGCGGTAGCCTCCTCTC CGGTGGTGGTCGCGCGCGCGCGGACGGTCGACGAGGGAGGTTTGGAGGGTGGGGGCGCGA CTCGGGGTTGAATTCGCTCGAGCTGACTCACTCCAGAGGGTTTTATAGTTTCAAGCACAA CGCTGCTCAAGATGCCAGCACTGAGGATGAAGAGGAACTTTGACGATGATGTTTTTAGGG ATGAGTTTGATTCCAAACCCACAAAATCTATGAAGATCTCACATTTTCAAGTCAGCGAAC TAGAGCAGTCAGCTGTGTTGAACTTGCCTTATAAAGATCCCCACGATGAGCTGGATTTGA CAACTCAGTTAGCTGGCCAGGACATTATGATCATGGAAGCTGCTAGTTTGGATGATGCTC TTGGAGGAGCATCTTTGCTCAAGGATTTAATATCTGAGGTGGCAGTTTCACCAAATATGG AGAATGATATGTTAGTTAATTATGAAGACATCAGATCTCAGTTAAATGTAGTAAATTATT TTGACAAAGATGAAGATGCAAATTCTGCATCATATAATAGCTGTACCGTTAATTGTCATG AAGAAAGCTGGGGCTCGAATGAGGGTTGCAGTCTGTTGGACATTTATAATCCTGATGATG CTTTCTCTTTCCTATTGGATACGCCCTCTGAGTTTCTGGGTAGTTTTACTGCATTATATG ATGAAGTTGTACCAATTGATTCATTGGTGAATATAAGTGGCCGATGTGGAGTATTCCCAC TTACTGAGAGCACTACAGAAGCCAGTATTGGTAATGAGCCATGCAGATCTGAGGGGGATA TGCTATTTAGTAACTCAGAGGTGTTAGAGTGGCTCAATCCACATCTGGCTGAGGAGGATT TGCCTAATCTCGTTGATTTTACTGAGCTGAACTCACATGCTGTATCAAAGGAGCAAGGGG CCAGGAAGGTCACTCTTGTACTTGATTTGGACGAAACCCTTGTTCATTCGACCACAGAGC AGTGTGATGACTATGACTTTACCTTTCCAGTGTTCTTTGATATGAAGGAGCATATGGTTT ATGTGAGGAAGAGACCACATCTCCACATGTTCCTCCAAAAAATGGCTGAGATGTTTGAGG TTGTTATATTCACAGCCAGCCAAAGTGTTTATGCAGATCAGCTGCTTGACATCTTGGATC CAGAGAAAAAACTGTTCTCTAGGCGTTATTTCCGGGAGTCATGTGTATTTACAAACACTA GCTACACGAAGGATCTGACAGTTGTTGGAGTTGACCTTGCTAAAGTTGTCATAATTGACA ACACTCCGCAGGTTTTCCAGTTGCAAGTGAATAATGGTATACCCATAGAGAGTTGGTTTA GCGACGACTCTGATGAGGCATTACCTCAGCTGATTCCGTTCCTGGAGACCCTTGCTTCTG CGGATGATGTCCGACCCATAATTGCCAAGAAGTTTGGCGACAAAAAGGATATTGCTGAGA TTTTCCAATAAATGTTAGGGATAGCTTTTTGTTTACTCAGATAGAGGAACAGAAACTTAA TTAACATGTTAACCGGGCTTGTTGACCTTTTTCTTTTCCTTTTTTACAGTGGGTGGTTTT CATAGGATTAAGAATTTTGGTGTTAGAGCTAGTTGTGAATTGTACATATCCTCGTATTTC TTAAACAGTTCTGTACATAGTATGCTGCCGGAAATGAAAGTGAACTTCAC