Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0663800-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:27102188:27104665:-1 gene:Os01g0663800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1296 family protein. (Os01t0663800-01);Hypothetical conserved gene. (Os01t0663800-02)
Sequence

AGGAATCAAGACAACAATGTTGCTCTAAATTCTTCAACAAATGGGGACGTTGAAGCCAGA
ATTGGCACTAGCATGGAGAATACTGATGAACCTTCAGTTTCACAGCCTGATATTCTGACG
CAGGGTGCTGTAGATGTGTCAAGTCTACAATACAATCTGCCATCAGTTTCAGATCATGTA
TATTCAAACACAACACAACCAAGTACGATGGAGAGCTCACAGGGAGACATACAAGTGCAA
CATCTTCCTCAGTTTTCAAGTTTACTGCAAGCAAATACTCTACACAACAACTTGCTGGGA
TCAAATCTTCCCAACCTTCGGGACTTTGACTTTTCACCATTGCTATCAACACAATTAGCT
ACAAAATATAACCCACCAGTACCGACTACCAGCTTACCAGCAATCTCCATGCAGGAGACA
TTGAAGCCAGGGGGATTCTCGAATGCACAACCTACACAAAATCTTCCCAGCGCGAGCATT
CCGTCTGGGCCTCCTCTCCCACAACAATTATCTGTACATCCGTACCCTCAGCCAACTCTG
CCCCTTGGACCTTTTTCCAATCTGGTTGGCTATCCATATTTGCCTCAAAACTACTATCTA
CCATCAGCAGCCTTTCAGCAATCTTTCTCAAGTAATGGACCTTTCCATCAATCTGCTGCT
ACCACTGGGGTGCCTGGTGTCAGTATGAAATATTCGATGCCACAATACAAGGGCAGCCTT
CCTGCTACAAGCCCACCACAGCCTTCATCAGTGGTCTCCGGATTTGGAGGTTTTGGTAGC
TCAAATAATATTCCTGGAAATTTCGGCTTAAATCAGAATGTCCCCTCTGCACCCACAACT
ATGGGGTTTGAAGAAGCTTTAAGCACACAGTTCAAAGATAACAGTCAATACATTGCCTTG
CAGCAGAACGACAACTCTGCAATGTGGCTTCATGGAGCTGCTGGTTCAAGGGCCGTTTCA
GCGGTACCACCTGGCAACTTCTATGGTTTCCAGGGCCAGAATCAGCCAGGTGGCTTCCGC
CAGGGGCAGCAGCCCTCTCAATACGGTGGCCTTGGGTACCCAAGCTTCTACCAGTCACAG
GCTGGTTTACCGCAGGAGCACCCGCAGAACCTTACTGAGGGAACCTTGAACAGCTCTCAG
ACCACTCCATCTCAGCCATCGCACCAGATCTGGCAACACATCTACTGA

Peptide Sequence

PEP ID

Os01t0663800-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:27102188:27104665:-1 gene:Os01g0663800 transcript:Os01t0663800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1296 family protein. (Os01t0663800-01);Hypothetical conserved gene. (Os01t0663800-02)
Sequence

RNQDNNVALNSSTNGDVEARIGTSMENTDEPSVSQPDILTQGAVDVSSLQYNLPSVSDHV
YSNTTQPSTMESSQGDIQVQHLPQFSSLLQANTLHNNLLGSNLPNLRDFDFSPLLSTQLA
TKYNPPVPTTSLPAISMQETLKPGGFSNAQPTQNLPSASIPSGPPLPQQLSVHPYPQPTL
PLGPFSNLVGYPYLPQNYYLPSAAFQQSFSSNGPFHQSAATTGVPGVSMKYSMPQYKGSL
PATSPPQPSSVVSGFGGFGSSNNIPGNFGLNQNVPSAPTTMGFEEALSTQFKDNSQYIAL
QQNDNSAMWLHGAAGSRAVSAVPPGNFYGFQGQNQPGGFRQGQQPSQYGGLGYPSFYQSQ
AGLPQEHPQNLTEGTLNSSQTTPSQPSHQIWQHIY

Transcript Sequence

Transcript ID

Os01t0663800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:27102188:27104665:-1 gene:Os01g0663800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1296 family protein. (Os01t0663800-01);Hypothetical conserved gene. (Os01t0663800-02)
Sequence

CAGGAATCAAGACAACAATGTTGCTCTAAATTCTTCAACAAATGGGGACGTTGAAGCCAG
AATTGGCACTAGCATGGAGAATACTGATGAACCTTCAGTTTCACAGCCTGATATTCTGAC
GCAGGGTGCTGTAGATGTGTCAAGTCTACAATACAATCTGCCATCAGTTTCAGATCATGT
ATATTCAAACACAACACAACCAAGTACGATGGAGAGCTCACAGGGAGACATACAAGTGCA
ACATCTTCCTCAGTTTTCAAGTTTACTGCAAGCAAATACTCTACACAACAACTTGCTGGG
ATCAAATCTTCCCAACCTTCGGGACTTTGACTTTTCACCATTGCTATCAACACAATTAGC
TACAAAATATAACCCACCAGTACCGACTACCAGCTTACCAGCAATCTCCATGCAGGAGAC
ATTGAAGCCAGGGGGATTCTCGAATGCACAACCTACACAAAATCTTCCCAGCGCGAGCAT
TCCGTCTGGGCCTCCTCTCCCACAACAATTATCTGTACATCCGTACCCTCAGCCAACTCT
GCCCCTTGGACCTTTTTCCAATCTGGTTGGCTATCCATATTTGCCTCAAAACTACTATCT
ACCATCAGCAGCCTTTCAGCAATCTTTCTCAAGTAATGGACCTTTCCATCAATCTGCTGC
TACCACTGGGGTGCCTGGTGTCAGTATGAAATATTCGATGCCACAATACAAGGGCAGCCT
TCCTGCTACAAGCCCACCACAGCCTTCATCAGTGGTCTCCGGATTTGGAGGTTTTGGTAG
CTCAAATAATATTCCTGGAAATTTCGGCTTAAATCAGAATGTCCCCTCTGCACCCACAAC
TATGGGGTTTGAAGAAGCTTTAAGCACACAGTTCAAAGATAACAGTCAATACATTGCCTT
GCAGCAGAACGACAACTCTGCAATGTGGCTTCATGGAGCTGCTGGTTCAAGGGCCGTTTC
AGCGGTACCACCTGGCAACTTCTATGGTTTCCAGGGCCAGAATCAGCCAGGTGGCTTCCG
CCAGGGGCAGCAGCCCTCTCAATACGGTGGCCTTGGGTACCCAAGCTTCTACCAGTCACA
GGCTGGTTTACCGCAGGAGCACCCGCAGAACCTTACTGAGGGAACCTTGAACAGCTCTCA
GACCACTCCATCTCAGCCATCGCACCAGATCTGGCAACACATCTACTGAGTCCTGCCCTC
GTGGGAGAAGCCCCTCTACACTGCCAGGTGATCTGGTGACCTGGCATGCGCCATGAAATG
AGCAGACTAGCTGAGCTGCCGTCTTGCGCGCGGAGAAGAGTGGACAATGCTTTCTACAGT
TTCGAAGTATGTTGCTGTTTTTTCTTCTTTTCTTCTTCACTTGTTGCGTGTGTCCGGGGA
CTAATTTCAGCTGTTACGAGTTTACTCGATAGTGAGTTGCTATGTTGTAACGGTAAGTCC
TAATTTCATCTAACAAGAGCTGCTTCTTAT