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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0658400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:26781113:26784353:-1 gene:Os01g0658400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN CONJUGATING ENZYME 5A description:Ubiquitin-conjugating enzyme E2 (Os01t0658400-01)
Sequence

ATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCA
TGCAGTGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCA
TCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCCTCCTGATTAT
CCCTTCAAACCACCCAAGGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGC
AACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCC
AAGGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTC
CCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACC
TGGACTCAGAGGTACGCCATGTAG

Peptide Sequence

PEP ID

Os01t0658400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:26781113:26784353:-1 gene:Os01g0658400 transcript:Os01t0658400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN CONJUGATING ENZYME 5A description:Ubiquitin-conjugating enzyme E2 (Os01t0658400-01)
Sequence

MASKRIQKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY
PFKPPKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLV
PEIAHMYKTDRHKYENTARTWTQRYAM

Transcript Sequence

Transcript ID

Os01t0658400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:26781113:26784353:-1 gene:Os01g0658400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UBIQUITIN CONJUGATING ENZYME 5A description:Ubiquitin-conjugating enzyme E2 (Os01t0658400-01)
Sequence

TCCCCCAACTCCATTATTGATTCTTGCAAGGAGGAAGAGCAGCTAGAGGCGAGGCAAGAA
AAGAAGTGAAATCTCTCCGTTAGACAGGAAGAGGAAAAGCAAGGGGGAATTGGGGATGGC
GTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAG
TGCAGGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGA
TAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTT
CAAACCACCCAAGGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGG
GAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGGT
GTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGA
GATCGCCCACATGTACAAGACAGATAGGCACAAGTACGAGAACACAGCAAGGACCTGGAC
TCAGAGGTACGCCATGTAGCACCTCAGATATCGATGGACATGTCGATGTTGTAACAACAT
TATCAACGGGTGTGTCTCCCTCTCGCCTTGTGTGGTGTAAGGATCAAAACCGGCTTTGCA
GTGCACTCTTGGTGTTGCTCCATTGTGTCACTCACTCATTGCAGTGATTTCGAATAGTAT
CAAACTGGTGGTTTTTTTCGGTCAGATAATGTTTGCAACTTGCCAAC