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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0657400-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:26734068:26735164:-1 gene:Os01g0657400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ETHYLENE RESPONSE FACTOR 54 description:Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5). (Os01t0657400-00)
Sequence

ATGTCCCGGTCGCGCACGGTGCGGATCTTCTGGGACGACCCCGACTTGACAGACTCGTCC
GGCGAGGACGAGGGGTGCGGCGGCCGGAGGGTGGGGAGCATGGTGCGGGAGCTGCCGCCT
GCCCAGATGCCCGTGGCGCAGGCAGCCGCTGCTGCTGCTTTGCCGGAGCAGTGCAGCGGC
GGGGACGGTGATATGGGAAGAAGGGTCGTTGGTGGCGGATGCACTGTGGGTGTGGGACGG
AGGAGGTTGACGAAGGACGGAGGGCCTGGCGCGCCGAGCACCAAGTTCCGCGGCGTCAGG
CGGAGGCCGTGGGGCAAGTTCGCGGCGGAGATCCGCGACCCGTGGCGCGGCGTGCGCGTC
TGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCGCGCGTGTACGACAACGCGGCCATC
CAGCTCCGCGGCCCCAGCGCCACCACCAACTTCTCCGCCTCCACCAACTCCGCGGGTGCA
CAAGATCCGGTGGCAGTTGGCTACGAGTCCGGCGCGGAGTCCTCGCCGGCGGTGTCGTCC
CCGACGTCTGTGCTCCGCAAGGTCCCGTCCCTGTGCTCCCTGGCCGAGGACAAGGACGAC
TATGAGGCCGGCCCCTGCGAGCCCGCAACTGCCGCCGGTTCCAACCTCACCGTTCTCGAG
GAGGAGGAGCTCGGCGAGTTCGTGCCGTTCGAGGACGCGCCGGTCTACGGCGGCAGCAGC
TTCTGGGACTTCGAGCCCGAGTCCGGCTTCCTGTACGCCGAGCCGTCGTCGCCTGAGACG
CCGTGGGACGCCGGCGCCACGTCCTCCGGCGAGGCCCAAGACTACTTCCAGGACTTGCGC
GACCTGTTCCCGCTCAACCCGCTTCCCGCAATTTTCTAA

Peptide Sequence

PEP ID

Os01t0657400-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:26734068:26735164:-1 gene:Os01g0657400 transcript:Os01t0657400-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ETHYLENE RESPONSE FACTOR 54 description:Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5). (Os01t0657400-00)
Sequence

MSRSRTVRIFWDDPDLTDSSGEDEGCGGRRVGSMVRELPPAQMPVAQAAAAAALPEQCSG
GDGDMGRRVVGGGCTVGVGRRRLTKDGGPGAPSTKFRGVRRRPWGKFAAEIRDPWRGVRV
WLGTFDTAEEAARVYDNAAIQLRGPSATTNFSASTNSAGAQDPVAVGYESGAESSPAVSS
PTSVLRKVPSLCSLAEDKDDYEAGPCEPATAAGSNLTVLEEEELGEFVPFEDAPVYGGSS
FWDFEPESGFLYAEPSSPETPWDAGATSSGEAQDYFQDLRDLFPLNPLPAIF

Transcript Sequence

Transcript ID

Os01t0657400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:26734068:26735164:-1 gene:Os01g0657400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ETHYLENE RESPONSE FACTOR 54 description:Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5). (Os01t0657400-00)
Sequence

AGTGAAGCACTAGCTCCACCCATCATCTTGGTACGTGCCATGTCCCGGTCGCGCACGGTG
CGGATCTTCTGGGACGACCCCGACTTGACAGACTCGTCCGGCGAGGACGAGGGGTGCGGC
GGCCGGAGGGTGGGGAGCATGGTGCGGGAGCTGCCGCCTGCCCAGATGCCCGTGGCGCAG
GCAGCCGCTGCTGCTGCTTTGCCGGAGCAGTGCAGCGGCGGGGACGGTGATATGGGAAGA
AGGGTCGTTGGTGGCGGATGCACTGTGGGTGTGGGACGGAGGAGGTTGACGAAGGACGGA
GGGCCTGGCGCGCCGAGCACCAAGTTCCGCGGCGTCAGGCGGAGGCCGTGGGGCAAGTTC
GCGGCGGAGATCCGCGACCCGTGGCGCGGCGTGCGCGTCTGGCTCGGCACCTTCGACACC
GCCGAGGAGGCCGCGCGCGTGTACGACAACGCGGCCATCCAGCTCCGCGGCCCCAGCGCC
ACCACCAACTTCTCCGCCTCCACCAACTCCGCGGGTGCACAAGATCCGGTGGCAGTTGGC
TACGAGTCCGGCGCGGAGTCCTCGCCGGCGGTGTCGTCCCCGACGTCTGTGCTCCGCAAG
GTCCCGTCCCTGTGCTCCCTGGCCGAGGACAAGGACGACTATGAGGCCGGCCCCTGCGAG
CCCGCAACTGCCGCCGGTTCCAACCTCACCGTTCTCGAGGAGGAGGAGCTCGGCGAGTTC
GTGCCGTTCGAGGACGCGCCGGTCTACGGCGGCAGCAGCTTCTGGGACTTCGAGCCCGAG
TCCGGCTTCCTGTACGCCGAGCCGTCGTCGCCTGAGACGCCGTGGGACGCCGGCGCCACG
TCCTCCGGCGAGGCCCAAGACTACTTCCAGGACTTGCGCGACCTGTTCCCGCTCAACCCG
CTTCCCGCAATTTTCTAAAAACGGGATCGGCTTCTTCAATCACGGAACTGCTTTTTTGGG
TGTTGTTGAGTATTCGTGCCTACTGTGTGTACTTCCTGTACGTGCTCTTCTGGTGTCTGC
TTGTGTTGAGTGAGTCGATGAGAAATGTATTGTCCTGAGAGTAGAGTTTTTTTCCG