Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0652600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:26392164:26396100:1 gene:Os01g0652600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase). (Os01t0652600-01)
Sequence

ATGGCGGCGGCCACCTCCACTTCCTCCACCGCGCTCGCCCACCCCAAAACCCTAAACCCC
GCCGCCGCCAAGGTCTCGTCGCCGCAGGTGATCGGGGCCACCATGCCGTCGCTGGACTTC
GAGACATCCGTCTTCAAGAAGGAGAAGGTGTCTCTAGCTGGCCATGACGAGTATATTGTG
AGGGGCGGGAGGAATCTGTTCCCGCTGCTGCCGGAGGCGTTCAAGGGGATCAAGCAGATC
GGCGTAATCGGATGGGGTTCTCAGGGTCCTGCACAAGCTCAGAACCTGAGGGACTCACTT
GCTGAGGCAAAATCAGACATCGTTGTTAAGATTGGTCTCCGGAAAGGTTCTAAATCTTTT
GAAGAAGCACGCGCAGCTGGATTTACTGAAGAGAGTGGGACACTTGGAGATATATGGGAG
ACTATCTCAAGTAGCGATCTTTTGTTGTTGTTGATATCAGATGCTGCTCAGGCGGATAAC
TATGAGGAAATTTTCTCACACATGAAACCCAACAGTATTCTTGGATTGTCACATGGATTT
CTCCTTGGACATTTGCAATCTGTTGGCCTTGATTTCCCTAAAAACATCAGTGTTGTTGCT
GTGTGTCCCAAGGGAATGGGCCCATCAGTTAGAAGGCTTTATGTTCAGGGAAAAGAAGTA
AACGGTGCTGGTATCAACTCCAGCTTTGCTGTACACCAGGATGTTGATGGAAGAGCAACA
GATGTCGCTCTTGGATGGTCAGTTGCTCTAGGTTCTCCTTTCACATTTGCTACTACTCTA
GAGCAGGAGTACCGAAGCGATATTTTTGGCGAGCGAGGTATTTTGCTTGGGGCTGTACAT
GGTATTGTGGAGGCTCTTTTCAGGAGATACACAGAGCATGGGTTGGATGAGGACTCAGCA
TACAAGAACACTGTTGAGTGCATCACTGGAATCATCTCTAAAACTATTTCGAAAAAGGGG
ATGCTTGAAGTGTACAATTCATTGACAGAAGAAGGAAAGAAGCAATTTATCGAGGCTTAC
AGTGCAGCATATTATCCATGCATGGATATACTATATGAATGCTATGAAGATGTTTCTTCT
GGAAGTGAAATTAGAAGTGTTGTTTTGGCTGGAAGGAGATTTTATGAAAAGGAAGGACTT
CCTGCTTTCCCGATGGGCAACATTGATCAAACACGTATGTGGAAGGTGGGTGAAAGGGTG
CGGTCAACACGGCCAGCAGGTGATCTTGGCCCATTACATCCTTTCACTGCTGGAGTGTAT
GTTGCACTTATGATGGCACAGATTGAAGTCCTTAGAAAGAAGGGCCACTCTTACTCGGAG
ATCATCAACGAGAGTTTGATCGAGTCTGTGGATTCCCTGAACCCATTCATGCACGCTCGT
GGGGTGGCCTTCATGGTTGATAACTGCTCCACAACAGCCCGGTTGGGATCAAGGAAATGG
GCGCCACGCTTCGACTACATCTTGACCCAACAAGCTTTTGTGACTGTTGACAAGAATGCT
CCAGTTAATCAAGACCTCATCAGCAATTTCTTCTCCGATCCCGTCCATAGTGCCATTGAA
GTCTGTGCTCAGTTGAGGCCCACCGTTGACATTTCAGTGCCTGCTGATGCAGACTTTGTG
CGTCCAGAGCTGCGACAATCTTCGTGA

Peptide Sequence

PEP ID

Os01t0652600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:26392164:26396100:1 gene:Os01g0652600 transcript:Os01t0652600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase). (Os01t0652600-01)
Sequence

MAAATSTSSTALAHPKTLNPAAAKVSSPQVIGATMPSLDFETSVFKKEKVSLAGHDEYIV
RGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSF
EEARAAGFTEESGTLGDIWETISSSDLLLLLISDAAQADNYEEIFSHMKPNSILGLSHGF
LLGHLQSVGLDFPKNISVVAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRAT
DVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVEALFRRYTEHGLDEDSA
YKNTVECITGIISKTISKKGMLEVYNSLTEEGKKQFIEAYSAAYYPCMDILYECYEDVSS
GSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVY
VALMMAQIEVLRKKGHSYSEIINESLIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKW
APRFDYILTQQAFVTVDKNAPVNQDLISNFFSDPVHSAIEVCAQLRPTVDISVPADADFV
RPELRQSS

Transcript Sequence

Transcript ID

Os01t0652600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:26392164:26396100:1 gene:Os01g0652600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase). (Os01t0652600-01)
Sequence

CTCTTTCCACTCCCGCAGTCACACCCTAAGCCCCTCCTCGCATCCCAAAATGGCGGCGGC
CACCTCCACTTCCTCCACCGCGCTCGCCCACCCCAAAACCCTAAACCCCGCCGCCGCCAA
GGTCTCGTCGCCGCAGGTGATCGGGGCCACCATGCCGTCGCTGGACTTCGAGACATCCGT
CTTCAAGAAGGAGAAGGTGTCTCTAGCTGGCCATGACGAGTATATTGTGAGGGGCGGGAG
GAATCTGTTCCCGCTGCTGCCGGAGGCGTTCAAGGGGATCAAGCAGATCGGCGTAATCGG
ATGGGGTTCTCAGGGTCCTGCACAAGCTCAGAACCTGAGGGACTCACTTGCTGAGGCAAA
ATCAGACATCGTTGTTAAGATTGGTCTCCGGAAAGGTTCTAAATCTTTTGAAGAAGCACG
CGCAGCTGGATTTACTGAAGAGAGTGGGACACTTGGAGATATATGGGAGACTATCTCAAG
TAGCGATCTTTTGTTGTTGTTGATATCAGATGCTGCTCAGGCGGATAACTATGAGGAAAT
TTTCTCACACATGAAACCCAACAGTATTCTTGGATTGTCACATGGATTTCTCCTTGGACA
TTTGCAATCTGTTGGCCTTGATTTCCCTAAAAACATCAGTGTTGTTGCTGTGTGTCCCAA
GGGAATGGGCCCATCAGTTAGAAGGCTTTATGTTCAGGGAAAAGAAGTAAACGGTGCTGG
TATCAACTCCAGCTTTGCTGTACACCAGGATGTTGATGGAAGAGCAACAGATGTCGCTCT
TGGATGGTCAGTTGCTCTAGGTTCTCCTTTCACATTTGCTACTACTCTAGAGCAGGAGTA
CCGAAGCGATATTTTTGGCGAGCGAGGTATTTTGCTTGGGGCTGTACATGGTATTGTGGA
GGCTCTTTTCAGGAGATACACAGAGCATGGGTTGGATGAGGACTCAGCATACAAGAACAC
TGTTGAGTGCATCACTGGAATCATCTCTAAAACTATTTCGAAAAAGGGGATGCTTGAAGT
GTACAATTCATTGACAGAAGAAGGAAAGAAGCAATTTATCGAGGCTTACAGTGCAGCATA
TTATCCATGCATGGATATACTATATGAATGCTATGAAGATGTTTCTTCTGGAAGTGAAAT
TAGAAGTGTTGTTTTGGCTGGAAGGAGATTTTATGAAAAGGAAGGACTTCCTGCTTTCCC
GATGGGCAACATTGATCAAACACGTATGTGGAAGGTGGGTGAAAGGGTGCGGTCAACACG
GCCAGCAGGTGATCTTGGCCCATTACATCCTTTCACTGCTGGAGTGTATGTTGCACTTAT
GATGGCACAGATTGAAGTCCTTAGAAAGAAGGGCCACTCTTACTCGGAGATCATCAACGA
GAGTTTGATCGAGTCTGTGGATTCCCTGAACCCATTCATGCACGCTCGTGGGGTGGCCTT
CATGGTTGATAACTGCTCCACAACAGCCCGGTTGGGATCAAGGAAATGGGCGCCACGCTT
CGACTACATCTTGACCCAACAAGCTTTTGTGACTGTTGACAAGAATGCTCCAGTTAATCA
AGACCTCATCAGCAATTTCTTCTCCGATCCCGTCCATAGTGCCATTGAAGTCTGTGCTCA
GTTGAGGCCCACCGTTGACATTTCAGTGCCTGCTGATGCAGACTTTGTGCGTCCAGAGCT
GCGACAATCTTCGTGAAGTTTTTGCCAACTCCAGGGGCACCTCATAAACTATGTCAGTAT
CTGACGGTTTCAACTCTCAAAGCTATGTATCACTATTTGAGAACCTAAATGTAAACTTTT
GGAGTGTAGGATTGTCGTTTGGTTGTCACTGGACTAGTGCTGGTGTTTGGCATGAATAAA
AATAGTGGTTTAATAAATGCCGTTCCCTTAGAGCAGCAGAGGTGGCTGCTCCCTCT