Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0652100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:26368398:26374101:-1 gene:Os01g0652100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 21 description:Protein of unknown function DUF231, plant domain containing protein. (Os01t0652100-01)
Sequence

ATGGCGCCAAGACAGCGGCTGTCATTCCGCCGCCTCGTCCTCCTCCTCGTCGCCTCCACC
GCCCTCGCGTGCTCGGTGCTCGCGGGCGGCGCCGTGGCGAGCGTGGTCGAGACGCTCGGC
GTCCGGCGTCACTTCGGCAGCCCGAAGCGCAACACCACGGGGCAGCACGGGGCCGGCCGG
CGCCGCGGCGGCGGCTCCGCCCGGAGCGGTCTGGCGTCGTGCAACATGTTCCAGGGAAGC
TGGGTGTACGACGACTCGCTGCCGATGTACGACACGGCGGGCTGCCCCTTCGTGGAGGCG
GAGTTCGACTGCCAGAAGTACGGCCGCCCCGACAAGCTCTACCTCAAGTACCGGTGGCGT
CCCAGCTCGTGCGAGCTCCCGAGGTTCAACGGGCTGGATTTCCTCAGCAAATGGAGGGGG
AAGAAGATACTGTTCGTGGGGGATTCCATCAGCCTGAACCAGTGGGAGTCGCTGGCGTGC
ATGCTGCACGCGGCCGCGCCGTCCTCCAGGACCACCTACAGCAGGGGCACCCCGTTCTCC
ACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACCTGGTG
GACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCGACGCG
TGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCGGCAGA
GACCAGCCATGGGACTTTGTGCAAGATGGAGGCCAGGTGATGAAGGACATGGACCGGCTC
TCGGCCTTCTCCAAGGGGATGTCTACATGGGCCAGATGGGTCGATTCGAACGTGGACACA
TCCAAGACCAGGGTCTACTTCCAGGGCATCTCTCCAACCCACTACAACGGAGCGGACTGG
GGGGAGGGGTCGAGGAGCTGCGCGCAGCAGACGCAGCCGGTGGCGGGGTCGGCGTACCCG
GCGGGGCCGGTGCCGGCGCAGAGCGCGGTGAGGAGCGCGATCGCCGGCATGTCGAAGCCG
GTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCGTCGGGG
TACAGCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGCCGGAC
GCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATAG

Peptide Sequence

PEP ID

Os01t0652100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:26368398:26374101:-1 gene:Os01g0652100 transcript:Os01t0652100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 21 description:Protein of unknown function DUF231, plant domain containing protein. (Os01t0652100-01)
Sequence

MAPRQRLSFRRLVLLLVASTALACSVLAGGAVASVVETLGVRRHFGSPKRNTTGQHGAGR
RRGGGSARSGLASCNMFQGSWVYDDSLPMYDTAGCPFVEAEFDCQKYGRPDKLYLKYRWR
PSSCELPRFNGLDFLSKWRGKKILFVGDSISLNQWESLACMLHAAAPSSRTTYSRGTPFS
TVTFQDYGVSVAYYRSTYLVDIVDESIGRVLKLDSISGDAWLGADMLIFNTWHWWTHTGR
DQPWDFVQDGGQVMKDMDRLSAFSKGMSTWARWVDSNVDTSKTRVYFQGISPTHYNGADW
GEGSRSCAQQTQPVAGSAYPAGPVPAQSAVRSAIAGMSKPVFLLDITLLSQLRRDGHPSG
YSGGHPGNDCSHWCLAGVPDAWNQILYASLLA

Transcript Sequence

Transcript ID

Os01t0652100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:26368398:26374101:-1 gene:Os01g0652100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 21 description:Protein of unknown function DUF231, plant domain containing protein. (Os01t0652100-01)
Sequence

ACTGGCTCACTGCCTCCCCTCGTCCGTCCCCAGTTCGTCACCCTTCATCTCCACAGCGCC
AGACAATGGCGCCAAGACAGCGGCTGTCATTCCGCCGCCTCGTCCTCCTCCTCGTCGCCT
CCACCGCCCTCGCGTGCTCGGTGCTCGCGGGCGGCGCCGTGGCGAGCGTGGTCGAGACGC
TCGGCGTCCGGCGTCACTTCGGCAGCCCGAAGCGCAACACCACGGGGCAGCACGGGGCCG
GCCGGCGCCGCGGCGGCGGCTCCGCCCGGAGCGGTCTGGCGTCGTGCAACATGTTCCAGG
GAAGCTGGGTGTACGACGACTCGCTGCCGATGTACGACACGGCGGGCTGCCCCTTCGTGG
AGGCGGAGTTCGACTGCCAGAAGTACGGCCGCCCCGACAAGCTCTACCTCAAGTACCGGT
GGCGTCCCAGCTCGTGCGAGCTCCCGAGGTTCAACGGGCTGGATTTCCTCAGCAAATGGA
GGGGGAAGAAGATACTGTTCGTGGGGGATTCCATCAGCCTGAACCAGTGGGAGTCGCTGG
CGTGCATGCTGCACGCGGCCGCGCCGTCCTCCAGGACCACCTACAGCAGGGGCACCCCGT
TCTCCACCGTCACGTTCCAGGACTACGGGGTGTCGGTGGCGTACTACCGGAGCACCTACC
TGGTGGACATCGTCGACGAGTCCATCGGCCGCGTGCTGAAGCTCGACTCCATCTCCGGCG
ACGCGTGGCTCGGCGCCGACATGCTCATCTTCAACACCTGGCACTGGTGGACCCACACCG
GCAGAGACCAGCCATGGGACTTTGTGCAAGATGGAGGCCAGGTGATGAAGGACATGGACC
GGCTCTCGGCCTTCTCCAAGGGGATGTCTACATGGGCCAGATGGGTCGATTCGAACGTGG
ACACATCCAAGACCAGGGTCTACTTCCAGGGCATCTCTCCAACCCACTACAACGGAGCGG
ACTGGGGGGAGGGGTCGAGGAGCTGCGCGCAGCAGACGCAGCCGGTGGCGGGGTCGGCGT
ACCCGGCGGGGCCGGTGCCGGCGCAGAGCGCGGTGAGGAGCGCGATCGCCGGCATGTCGA
AGCCGGTGTTCCTGCTCGACATCACGCTGCTGTCGCAGCTGAGGAGGGACGGGCACCCGT
CGGGGTACAGCGGCGGCCACCCGGGCAACGACTGCAGCCACTGGTGCCTCGCCGGCGTGC
CGGACGCATGGAACCAGATCCTGTACGCCTCGCTCCTTGCATAGAGGGAAAGAATTGGAA
GGGGATATATCTCTCAATCCGATTGGCCGTTCTCTCATAATTTGTTGGTTGATTGTATGG
AGAGTATTTCAATTGGTGGTTCCATAATTGGTTAACTGATATATATGGATAGTCCATCAG
AGGATACTACATTTTCCTTCTTGTTGGAGAAGTTGGGGATAATGCCAGGGTAGACAGCGA
GGATCAACTGGATACAACTCCTTCAAAAGACAACAGATGGTTGTTCGGATGTGGATGGAA
AATTGGAAACAACTAGTAGTGTAGTACTATTTCTAATCCAATACGCTTAATAAAGATATA
CCAAGCAGGCAAGCACAACGTTGATCTCAACCGTTGGCAGTAATCCTTTACATATGGTAG
TACCAGAATTTCCAGACAACAGATTTATCTACCACCACACACATACATTTCGCTGCAAAA
TTATGTAAAGCTAATCACAACCCAGCCAAGCTGACGAGATACTGGTTAGGAATAGGGCCC
TAGAGAGAGAACATGGAGGGGACAAAAATGAAAGACGGCTACAGTGACAACGAGAACATA
GATTGTTCACTGGTGTGATAAATCTAGTGAGAACATTTCTCAACAGAAACAAGCAAGAAA
GCAAACGAACTATGGTAACGACGAAATGATATGATACATCGGGATAGTAAAATGGTGCTC
AGGCCCTGGCAACGAGTTTTTGCTGCCTCCTTAGATGACGGTTCTGCTCTTGTCGTTGTA
TCCGGCACATAGATGCCTTCTCCTTGAGCTCTTGGAATGCCCGCATGGTGTCCACGTCGA
ACCCGCCTGCAAACTGCAGCAAACGAGGAGTATGGATGTGATTCGTTTCAAAGTTGCACC
TTGGAAGAAAATGTAAGCATGAATTCTTTTCAGAAATTATTCATGCGCATCTTAACATCT
TAGCGAGTAAATATATACCTGGTGTACCCTGAAGGCGAATCGCACTCCTTGAAGCATTAG
TTCTTCTTCGTCAGGACCACCCTTTATGGCCTCAAGTTCAGAAGAGACCCGCTTCAAGTA
CTTCATTGCTAACTTCACCGACTGGAGTTTGATCTGTACACCAAAGGTTACATTCATGAG
TAATCATCAAACGTACACGTTTATTCATGCATTTTATCGATAAAAGAAATCACAGATATG
CCCAAATTACTTGCCCATGAATCAAATGGACATCATTCAGAGAAAGAGAGGACTGCTTTC
ATTTGTTAGCCTCAAAAGTTAGGATATGAAGCGGCCAAACGACAGGACAGACCAATCAAC
TCAGTGATTGCAGATTGATGAGGGCATGTGTTTATGTTTCTAATTTTCCTACCAATTTGT
AAACTGTAAATGTTTTTTCGCGAATGCAATAAACTGTAAATGTAAAGACTTCATGTGCAA
TTTACAAACTGATAGGCC