Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0645200-03
CDS Infomation

cds chromosome:IRGSP-1.0:1:25973809:25980371:1 gene:Os01g0645200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASS2 description:Hypothetical conserved gene. (Os01t0645200-01);Bile acid:sodium symporter domain containing protein. (Os01t0645200-02);Bile acid:sodium symporter domain containing protein. (Os01t0645200-03)
Sequence

ATGGCGGCGTCCACCACCTGCCCTGCTCGCTCCATGGCGTCCGTCTCCCGAGCCCTCCGC
CCGCGGCCGCACGCCGCTATCGCCTCCGCCGCCGTCCGCACGGCTGCTCGTCTCGGGGGC
GGATTGGGGATCGTTTGTTCGATGCCAAGCTATGGTAGGAAGGAGAAGGAAGAATGGGGA
TTGACCATTGCGTCCGCACCGGCGACCACTGCTGCTCCGGCTCTGAGAAGCTGTCAACTA
TTGTGCAAGGCTGAAGCTAACATATCCAGTAATCTGCCAGAGAGCATTCCTAGTGAAGCA
AACCAGTACGAGAAAATAGTTGAGCTGCTTACCACTCTTTTCCCTGTCTGGGTCATATTA
GGTACCATTATTGGCATCTACAAGCCATCGATGGTTACCTGGTTGGAGACTGATCTTTTC
ACTGTGGGCCTAGGATTCCTAATGCTATCAATGGGACTAACATTGACCTTCGAAGATTTC
AGGAGATGCATGAGGAATCCATGGACTGTGGGTGTGGGATTTCTTGCGCAGTATTTGATC
AAACCTATGCTGGGATTTGCTATTGCCATGACCTTGAAGTTATCTGCTCCTCTTGCAACT
GGTCTTATTTTAGTGTCATGTTGCCCTGGTGGACAAGCATCAAATGTTGCTACTTATATA
TCCAAAGGAAATGTCGCACTTTCAGTTCTTATGACAACTTGTTCGACTATTGGTGCTATA
GTGATGACACCACTCCTTACTAAACTCCTAGCTGGTCAACTGGTTCCTGTCGATGCTGCA
GGATTGGCCATCAGTACTTTTCAGGTTGTTTTACTGCCAACTATTGTCGGAGTCTTGGCG
CATGAGTATTTTCCTAAGTTTACTGAGCGCATTATATCCATAACACCATTGATTGGGGTT
CTCCTCACCACTTTGCTTTGTGCTAGTCCTATCGGACAAGTCTCAGAGGTGTTGAAAGCT
CAAGGTGGTCAACTTATAATTCCCGTTGCTCTGCTGCATGTTGCTGCCTTTGCACTTGGG
TATTGGTTATCAAAAGTTTCCTCTTTTGGGGAATCAACTTCTAGGACTATCTCTATTGAA
TGCGGGATGCAGAGTTCTGCACTTGGATTTTTACTTGCCCAAAAGCACTTCACGAATCCA
CTCGTAGCTGTTCCATCTGCTGTCAGTGTTGTATGCATGGCGCTTGGAGGGAGTGCTCTT
GCAGTTTTTTGGAGGAACAGAGGGCTTCCAGCAAATGACAAAGACGATTTCAAGGAATGA

Peptide Sequence

PEP ID

Os01t0645200-03
PEP Infomation

pep chromosome:IRGSP-1.0:1:25973809:25980371:1 gene:Os01g0645200 transcript:Os01t0645200-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASS2 description:Hypothetical conserved gene. (Os01t0645200-01);Bile acid:sodium symporter domain containing protein. (Os01t0645200-02);Bile acid:sodium symporter domain containing protein. (Os01t0645200-03)
Sequence

MAASTTCPARSMASVSRALRPRPHAAIASAAVRTAARLGGGLGIVCSMPSYGRKEKEEWG
LTIASAPATTAAPALRSCQLLCKAEANISSNLPESIPSEANQYEKIVELLTTLFPVWVIL
GTIIGIYKPSMVTWLETDLFTVGLGFLMLSMGLTLTFEDFRRCMRNPWTVGVGFLAQYLI
KPMLGFAIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAI
VMTPLLTKLLAGQLVPVDAAGLAISTFQVVLLPTIVGVLAHEYFPKFTERIISITPLIGV
LLTTLLCASPIGQVSEVLKAQGGQLIIPVALLHVAAFALGYWLSKVSSFGESTSRTISIE
CGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNRGLPANDKDDFKE

Transcript Sequence

Transcript ID

Os01t0645200-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:25973809:25980371:1 gene:Os01g0645200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASS2 description:Hypothetical conserved gene. (Os01t0645200-01);Bile acid:sodium symporter domain containing protein. (Os01t0645200-02);Bile acid:sodium symporter domain containing protein. (Os01t0645200-03)
Sequence

AACTCCACCAGCAGCAGTCACGCACGTCTCTCTCTCTCGCCCCGCGTCCTCCACATGGCG
GCGTCCACCACCTGCCCTGCTCGCTCCATGGCGTCCGTCTCCCGAGCCCTCCGCCCGCGG
CCGCACGCCGCTATCGCCTCCGCCGCCGTCCGCACGGCTGCTCGTCTCGGGGGCGGATTG
GGGATCGTTTGTTCGATGCCAAGCTATGGTAGGAAGGAGAAGGAAGAATGGGGATTGACC
ATTGCGTCCGCACCGGCGACCACTGCTGCTCCGGCTCTGAGAAGCTGTCAACTATTGTGC
AAGGCTGAAGCTAACATATCCAGTAATCTGCCAGAGAGCATTCCTAGTGAAGCAAACCAG
TACGAGAAAATAGTTGAGCTGCTTACCACTCTTTTCCCTGTCTGGGTCATATTAGGTACC
ATTATTGGCATCTACAAGCCATCGATGGTTACCTGGTTGGAGACTGATCTTTTCACTGTG
GGCCTAGGATTCCTAATGCTATCAATGGGACTAACATTGACCTTCGAAGATTTCAGGAGA
TGCATGAGGAATCCATGGACTGTGGGTGTGGGATTTCTTGCGCAGTATTTGATCAAACCT
ATGCTGGGATTTGCTATTGCCATGACCTTGAAGTTATCTGCTCCTCTTGCAACTGGTCTT
ATTTTAGTGTCATGTTGCCCTGGTGGACAAGCATCAAATGTTGCTACTTATATATCCAAA
GGAAATGTCGCACTTTCAGTTCTTATGACAACTTGTTCGACTATTGGTGCTATAGTGATG
ACACCACTCCTTACTAAACTCCTAGCTGGTCAACTGGTTCCTGTCGATGCTGCAGGATTG
GCCATCAGTACTTTTCAGGTTGTTTTACTGCCAACTATTGTCGGAGTCTTGGCGCATGAG
TATTTTCCTAAGTTTACTGAGCGCATTATATCCATAACACCATTGATTGGGGTTCTCCTC
ACCACTTTGCTTTGTGCTAGTCCTATCGGACAAGTCTCAGAGGTGTTGAAAGCTCAAGGT
GGTCAACTTATAATTCCCGTTGCTCTGCTGCATGTTGCTGCCTTTGCACTTGGGTATTGG
TTATCAAAAGTTTCCTCTTTTGGGGAATCAACTTCTAGGACTATCTCTATTGAATGCGGG
ATGCAGAGTTCTGCACTTGGATTTTTACTTGCCCAAAAGCACTTCACGAATCCACTCGTA
GCTGTTCCATCTGCTGTCAGTGTTGTATGCATGGCGCTTGGAGGGAGTGCTCTTGCAGTT
TTTTGGAGGAACAGAGGGCTTCCAGCAAATGACAAAGACGATTTCAAGGAATGAAACACC
AACACCCTCCAGTTTCTAGTCATTACCTAGTGTTGTTTTTTAGTTCAGTGGAGTTATCAC
AGCATTTTTCTTGTTACCCATATTTTAGCAAGTTGATTATCAGTAGGACTTGCCTACTTG
GTAGGTCTGTTGTATTGCACTCTTATCTTCCAAATAAGCTGCAGGTGCTTCTCTGCAAAG
CACTCAATTTATAGTCCGTTGCCAAGTGAATGCATTGTAATATTATGCGCGGTGAGTAAA
TAGATTTCCAAGAATTGCTATTCCAATCTATTGAAAGGTCAATAAGCTTTGTATGT