Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0641100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:25762489:25766525:1 gene:Os01g0641100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HD domain containing protein. (Os01t0641100-01)
Sequence

ATGGGCGTGACCACGCGGCTGCCGGCCCCTCCAGGGGGCGGCCTCCAGCGCCGCGCGCCG
CGGGGCATCCTCCCGGCCTCGCTCCCCGTGGAGCGCCCGGCGCGGCGCCGCCTCGCGCCC
GGCGTCCGCGCCGCCTCCGGGATCCCTGGACCCGGCGGATCGCCCGTCCCTAGGCGGACG
ACGCCTGCGCCGGCCGACGCGGCCGCCGCGGCGCCGCCCTCCGCCGCGGCGTCGTCTGCC
TCCTCGGCCATCGATTTCCTCACCCTCTGCCATCGCCTTAAGACCACTAAAAGGAAAGGC
TGGATAAACCATAGCATAAAGGGTCCTGAGTCTATTGCTGATCACATGTACCGTATGGCC
CTTATGGCTTTGATTGCCGGTGACCTACCTGCTGTAGATCGAGAAAGATGCATCAAAATT
GCTATCGTGCATGACATTGCTGAAGCTATTGTTGGTGACATTACTCCATCCGACGGTATA
CCTAAAGCGGAAAAAAGCCGCCGTGAACAAAAGGCTCTAAATGAAATGTGTGAAGTTCTC
GGTGGAGGACCAATAGCTGATGAGATCAAGGAGCTCTGGGAAGAATATGAAAATAATTCA
TCCATTGAAGCCAACCTTGTAAAGGATTTTGATAAAGTGGAAATGATACTTCAAGCACTA
GAATATGAGAAAGAGCATGGCAAAGTGTTAGATGAGTTCTTCCTCTCTACCGCTGGCAAG
TTCCAGACAGAGATTGGCAAGAGCTGGGCTGCTGAAGTGAATGCGAGGAGAGAACAGAGA
TGCGGAAAACAGAAGTAG

Peptide Sequence

PEP ID

Os01t0641100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:25762489:25766525:1 gene:Os01g0641100 transcript:Os01t0641100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HD domain containing protein. (Os01t0641100-01)
Sequence

MGVTTRLPAPPGGGLQRRAPRGILPASLPVERPARRRLAPGVRAASGIPGPGGSPVPRRT
TPAPADAAAAAPPSAAASSASSAIDFLTLCHRLKTTKRKGWINHSIKGPESIADHMYRMA
LMALIAGDLPAVDRERCIKIAIVHDIAEAIVGDITPSDGIPKAEKSRREQKALNEMCEVL
GGGPIADEIKELWEEYENNSSIEANLVKDFDKVEMILQALEYEKEHGKVLDEFFLSTAGK
FQTEIGKSWAAEVNARREQRCGKQK

Transcript Sequence

Transcript ID

Os01t0641100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:25762489:25766525:1 gene:Os01g0641100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HD domain containing protein. (Os01t0641100-01)
Sequence

CTATTCCTCCGGCGATCCCATCCCATTGATCCGTAGCCTTCCGCCTCCGCCACCACCACA
AGCTCCGATCCACAGCGCACCTCGAGCCCTACCTCCGATGGGCGTGACCACGCGGCTGCC
GGCCCCTCCAGGGGGCGGCCTCCAGCGCCGCGCGCCGCGGGGCATCCTCCCGGCCTCGCT
CCCCGTGGAGCGCCCGGCGCGGCGCCGCCTCGCGCCCGGCGTCCGCGCCGCCTCCGGGAT
CCCTGGACCCGGCGGATCGCCCGTCCCTAGGCGGACGACGCCTGCGCCGGCCGACGCGGC
CGCCGCGGCGCCGCCCTCCGCCGCGGCGTCGTCTGCCTCCTCGGCCATCGATTTCCTCAC
CCTCTGCCATCGCCTTAAGACCACTAAAAGGAAAGGCTGGATAAACCATAGCATAAAGGG
TCCTGAGTCTATTGCTGATCACATGTACCGTATGGCCCTTATGGCTTTGATTGCCGGTGA
CCTACCTGCTGTAGATCGAGAAAGATGCATCAAAATTGCTATCGTGCATGACATTGCTGA
AGCTATTGTTGGTGACATTACTCCATCCGACGGTATACCTAAAGCGGAAAAAAGCCGCCG
TGAACAAAAGGCTCTAAATGAAATGTGTGAAGTTCTCGGTGGAGGACCAATAGCTGATGA
GATCAAGGAGCTCTGGGAAGAATATGAAAATAATTCATCCATTGAAGCCAACCTTGTAAA
GGATTTTGATAAAGTGGAAATGATACTTCAAGCACTAGAATATGAGAAAGAGCATGGCAA
AGTGTTAGATGAGTTCTTCCTCTCTACCGCTGGCAAGTTCCAGACAGAGATTGGCAAGAG
CTGGGCTGCTGAAGTGAATGCGAGGAGAGAACAGAGATGCGGAAAACAGAAGTAGAAGTG
GCTAGCTCTACGTTTGATTGCTTTAGCCTTGCTGAAATGTGCTGTCATGACGGGGTGATC
TGACGAGTTGCAAGGTCCAGAGTCAACTTCAATATAAACTTGACTTGTTGGAGACTTGGT
AGGAAATAGTGTTGTCCAAAACTCAGGATCTGAGCCCGTCCAGAGTTCTTGGGCTGCGCT
CAGGCTCGCAGTACGTACTGAGCAATTGCTATATACTCCTAATAGTTAGGGATCTAAGGA
GACATGCGTTTTCATGAACTCAGGTAATAATAAAATAATAGTAACATTTTCTGTTTTACG
TTTTACATTTGATGGACTGGAGCATGTTCAACCATTCATTGTTTTCTCTATTGCATAAAA
AGGCTGCACGAGCCACTTGTATTACGTTGTC