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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0637500-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:25582050:25583950:1 gene:Os01g0637500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os01t0637500-00)
Sequence

CTGGATGGAACAATTGTAGCCCCAACCAGTGCTAAAGCTTGGGATTCTGGTTTGCTTCAA
TGGATTGAGTTTACAAAACTAAATGGAGTATCAATTCAAGGCAATGGCATCATAAATGGT
AGAGGACAACAATGGTGGACCTATTCAGACACAGATGACGACGAAAATGATGACACACAG
TACGATGTGGAGTTTGAAAGGATGCCACAAGTTAAACCTACAGCACTGAGATTCTATGGT
AGTTTCAACGTTGTAGTAGCTGGTATCACTATTGTCAACAGCTCGCAGTGTCATCTCAAG
TTTGACAGCTGTCAAGGAGTGATGGTCCATGACGTAACAATATCCTCCCCAGAAAACAGC
CTCAACACTGATGGAATACACCTGCAGAACTCTAAAGATGTCAGCATTCATCATACCAAC
CTGGCTTGTGGTGATGACTGCGTCTCCATTCAAACAGGATGCAGCAATATAAATATACAC
AATGTGAATTGTGGACCTGGCCATGGAATCAGCATTGGAGGCCTAGGCCGGGACAACACA
AAAGCATGTGTCTCCAATGTTACTGTAAGAGATGTCAACATGTTCAGAACCATGACTGGT
GTCAGAATCAAGACCTGGCAGGGTGGCTTAGGCTTGGTTCAAGATGTACGGTTCTCGAAC
ATCCAAGTCTCAGAAGTCCAAACACCAATCATCATAGACCAGTTTTACTGTGACGAAAGA
ACATGCTCAAATCAAACATCAGCAGTGGCAGTATCAGGCGTTCAGTATGAGAACATCAGA
GGAACATTTACTATCAAGCCTGTTCATTTTGCATGCAGTGACAGCTCACCTTGTTCAGGG
ATAACTCTTACTGGAGTACAACTCAGGCCTGTCCAAATATCCCACTACCGCCTAAACAAC
CCTTTCTGCTGGCAAGCTTTTGGGGAGCTCTACACTCCAACAGTCCCTCCAATTGCTTGC
TTGCACCTTGGAAAACCTGCTGGGAACAACTTACAGTCATATCACGACTTATGTTGA

Peptide Sequence

PEP ID

Os01t0637500-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:25582050:25583950:1 gene:Os01g0637500 transcript:Os01t0637500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os01t0637500-00)
Sequence

LDGTIVAPTSAKAWDSGLLQWIEFTKLNGVSIQGNGIINGRGQQWWTYSDTDDDENDDTQ
YDVEFERMPQVKPTALRFYGSFNVVVAGITIVNSSQCHLKFDSCQGVMVHDVTISSPENS
LNTDGIHLQNSKDVSIHHTNLACGDDCVSIQTGCSNINIHNVNCGPGHGISIGGLGRDNT
KACVSNVTVRDVNMFRTMTGVRIKTWQGGLGLVQDVRFSNIQVSEVQTPIIIDQFYCDER
TCSNQTSAVAVSGVQYENIRGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQISHYRLNN
PFCWQAFGELYTPTVPPIACLHLGKPAGNNLQSYHDLC

Transcript Sequence

Transcript ID

Os01t0637500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:25582050:25583950:1 gene:Os01g0637500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to polygalacturonase. (Os01t0637500-00)
Sequence

TTATTTTGTAGCTGGATGGAACAATTGTAGCCCCAACCAGTGCTAAAGCTTGGGATTCTG
GTTTGCTTCAATGGATTGAGTTTACAAAACTAAATGGAGTATCAATTCAAGGCAATGGCA
TCATAAATGGTAGAGGACAACAATGGTGGACCTATTCAGACACAGATGACGACGAAAATG
ATGACACACAGTACGATGTGGAGTTTGAAAGGATGCCACAAGTTAAACCTACAGCACTGA
GATTCTATGGTAGTTTCAACGTTGTAGTAGCTGGTATCACTATTGTCAACAGCTCGCAGT
GTCATCTCAAGTTTGACAGCTGTCAAGGAGTGATGGTCCATGACGTAACAATATCCTCCC
CAGAAAACAGCCTCAACACTGATGGAATACACCTGCAGAACTCTAAAGATGTCAGCATTC
ATCATACCAACCTGGCTTGTGGTGATGACTGCGTCTCCATTCAAACAGGATGCAGCAATA
TAAATATACACAATGTGAATTGTGGACCTGGCCATGGAATCAGCATTGGAGGCCTAGGCC
GGGACAACACAAAAGCATGTGTCTCCAATGTTACTGTAAGAGATGTCAACATGTTCAGAA
CCATGACTGGTGTCAGAATCAAGACCTGGCAGGGTGGCTTAGGCTTGGTTCAAGATGTAC
GGTTCTCGAACATCCAAGTCTCAGAAGTCCAAACACCAATCATCATAGACCAGTTTTACT
GTGACGAAAGAACATGCTCAAATCAAACATCAGCAGTGGCAGTATCAGGCGTTCAGTATG
AGAACATCAGAGGAACATTTACTATCAAGCCTGTTCATTTTGCATGCAGTGACAGCTCAC
CTTGTTCAGGGATAACTCTTACTGGAGTACAACTCAGGCCTGTCCAAATATCCCACTACC
GCCTAAACAACCCTTTCTGCTGGCAAGCTTTTGGGGAGCTCTACACTCCAACAGTCCCTC
CAATTGCTTGCTTGCACCTTGGAAAACCTGCTGGGAACAACTTACAGTCATATCACGACT
TATGTTGATATACACAAAGGTACCTTCATCCATTGATTGGTGCTTATCCATGAATGGTCG
TGAAACTTCCGACCCCTTTGCACCATTGCTTGGCGGTGTGCATATATACAGTTATTCTGA
TGCCATTGTTACTATAGCACGTGTGACCCTTCAATTAAAGAAAAGATAGATAGTCCATAT
GAAAAATGGTCAT