Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0635400-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:25466388:25474144:1 gene:Os01g0635400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-20 description:Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog). (Os01t0635400-01);Similar to rae1-like protein. (Os01t0635400-02)
Sequence	ATGGCGAGCTTTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAACAAGTCCCTCGAG GTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCCAAGGCGAACCAC CTCGTCGCCACATCATGGGACAACCAGGTTCGTTGCTGGGAGATCCAGCCTGGAGGCCAA TGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGGTGCTGTGCTCGGCATGGAAGGAT GATGGGACTACTGTTTTTTCGGGAGGTTGTGATAAACAGATTAAGATGTGGCCGCTGCTC TCCGGTGGGCAGCCCATGGTTTTATCAGGGCATGAAGCACCGGTCAAAGAGCTTGCCTGG ATACCACAGATGAACCTTCTTGTTAGTGGGAGCTGGGACAAGACTCTGAGGTACTGGGAT GTTCGACAACCTCAGCCAGCACATGTTCAGCAACTACCTGAGCGCTGTTATGCTCTCTCA CTTAGTTATCCTCTCATGGTGGTTGGCACTGCTGATCGAAATGTAATAGTCTTCAATATG CAGAATCCACAGGCTGAATTCAAGAGGATTGTGTCACCTTTAAAACTCCAGACAAGGTGT CTTGCTGCATTTCCTGATCAGCAAGGGTTTCTGGTTGGATCGATAGAAGGACGAGTTGGT GTTCATCATGTTGATGATGGTCAACAAGGGAAAAACTTTACATTTAAATGTCACCGTGAT GGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTGTGCACCATACTTTTGCC ACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAGCAAAGGCTTAAG GCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAGGATGGCTCAATA TTTGCTTATGCGGTATGCTATGATTGGAGCAAGGGTGCCGAGAAGCACAATCCTTCTACT GCAAAAACAAATATCTTTCTCCATAGTGTCCAGGAATCTGAGGTCAAAGGAAAGCCCCGT GTTAATAAGAAGTAG

Peptide Sequence

PEP ID	Os01t0635400-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:25466388:25474144:1 gene:Os01g0635400 transcript:Os01t0635400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-20 description:Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog). (Os01t0635400-01);Similar to rae1-like protein. (Os01t0635400-02)
Sequence	MASFTAGGGGANNNPNKSLEVNPAPGDSVSSLSFSPKANHLVATSWDNQVRCWEIQPGGQ CQAKASISHDQPVLCSAWKDDGTTVFSGGCDKQIKMWPLLSGGQPMVLSGHEAPVKELAW IPQMNLLVSGSWDKTLRYWDVRQPQPAHVQQLPERCYALSLSYPLMVVGTADRNVIVFNM QNPQAEFKRIVSPLKLQTRCLAAFPDQQGFLVGSIEGRVGVHHVDDGQQGKNFTFKCHRD GNDIYAVNALNFHPVHHTFATSGSDGGFNFWDKDSKQRLKAFNKCPSPITCSTFNQDGSI FAYAVCYDWSKGAEKHNPSTAKTNIFLHSVQESEVKGKPRVNKK

Transcript Sequence

Transcript ID	Os01t0635400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:25466388:25474144:1 gene:Os01g0635400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-20 description:Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog). (Os01t0635400-01);Similar to rae1-like protein. (Os01t0635400-02)
Sequence	TCCTCCTCCGCTTCCCTCTCCTCCCCTCCCCTCGCTCCCCAAAATTTCCCAAACTCCCCG CCGCCCAACACAATGGCGAGCTTTACCGCCGGCGGCGGCGGCGCCAACAACAACCCCAAC AAGTCCCTCGAGGTGAATCCGGCGCCCGGGGACTCGGTTTCCAGCCTCAGCTTCAGTCCC AAGGCGAACCACCTCGTCGCCACATCATGGGACAACCAGGTTCGTTGCTGGGAGATCCAG CCTGGAGGCCAATGCCAAGCGAAGGCCTCGATCTCGCACGATCAGCCGGTGCTGTGCTCG GCATGGAAGGATGATGGGACTACTGTTTTTTCGGGAGGTTGTGATAAACAGATTAAGATG TGGCCGCTGCTCTCCGGTGGGCAGCCCATGGTTTTATCAGGGCATGAAGCACCGGTCAAA GAGCTTGCCTGGATACCACAGATGAACCTTCTTGTTAGTGGGAGCTGGGACAAGACTCTG AGGTACTGGGATGTTCGACAACCTCAGCCAGCACATGTTCAGCAACTACCTGAGCGCTGT TATGCTCTCTCACTTAGTTATCCTCTCATGGTGGTTGGCACTGCTGATCGAAATGTAATA GTCTTCAATATGCAGAATCCACAGGCTGAATTCAAGAGGATTGTGTCACCTTTAAAACTC CAGACAAGGTGTCTTGCTGCATTTCCTGATCAGCAAGGGTTTCTGGTTGGATCGATAGAA GGACGAGTTGGTGTTCATCATGTTGATGATGGTCAACAAGGGAAAAACTTTACATTTAAA TGTCACCGTGATGGCAATGACATATACGCTGTTAACGCATTGAACTTTCACCCTGTGCAC CATACTTTTGCCACTTCGGGCTCTGATGGAGGTTTCAACTTTTGGGACAAGGACAGTAAG CAAAGGCTTAAGGCTTTCAATAAGTGTCCGTCACCCATCACATGCAGTACATTCAATCAG GATGGCTCAATATTTGCTTATGCGGTATGCTATGATTGGAGCAAGGGTGCCGAGAAGCAC AATCCTTCTACTGCAAAAACAAATATCTTTCTCCATAGTGTCCAGGAATCTGAGGTCAAA GGAAAGCCCCGTGTTAATAAGAAGTAGACCTGACAACAAGAAGTTGAGGATTGGTTATCA TAATCATAACATCATCTCGCTGATGCTAATTTCCTGCATGAGTATCCTCCTTCCGAACTC TTTATGCCATCTCTTCGTCTATGAGACGGTAACTTGTAAACACATACTTTTCTGGTCGTC ATTGTTGTGAATTGCAATAGTGGACAATGGTAGTTATATGCAATCTTTACACC