Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0623200-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:24861697:24864291:-1 gene:Os01g0623200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to C4-dicarboxylate transporter/malic acid transport protein. (Os01t0623200-01)
Sequence	ATGGAGTTCGGCAACGACGTCCGGATCAGAATGGACGGTGGTGTGTACGGGGAGAGCGAG CAATCGTCCGGGGAAGCCGCTCTCCCGCGGCTGCTGATCGAGGTCCCCTCGCAGGTCATC GACGGCTTCGACTGCGTCGGCGGCGGTGGCGACGCCACGGCCACGGCCACGCTCAGCGAG CAGAGCAAGGAACTCGAAATGCTGGGCGAGGAGAAGGACGTCGTGATTAGCATCCCGGCG CCGGTGTACGCTCCACGATCCGTGTCGGTGTCGGCGGCGTACGAACACGAGGGCGCGCAG ATACCGTACTCCGTGTCGCTGAGCATGCCGGCGTCGCCATCGGGGTTCCACTTCTCGCAG TTCGGGATGGCGGCGGCGAAGGCGAAGGCCGTCCACCGCGACGAGGCCCGCGTGGCGCCG GCGGAGACCAGGTTCGACGACGCGCACCCGCCGGCGGTGGGGCGAGTGCAGGCGCACTCC CCGCGGCTGCTGCTGAATCAGACGCGGTTCCACTCGCAGCCCATCCTGCACCTGTCCAAG AACGACGAGACGACGCGGCGGTGCGACAGCACGCGCGACAAGCGGTTCGACCAGTTCAAG ACCTTCTCCGGCCGCCTCGAGCGGCAGCTCTCCACCCTGCGCGGCCGGCCGGCGCAGGAG CACATGACCAACGGCGAGGGCGCCCCCGAGCCGAACATCGCCGAGGAGGAGACGGAGCAG GTCCCCGGCGCCGACCGCTACTTCGACGCCCTGGAGGGCCCCGAGCTGGAGACGCTGAGG GCGACGGAGACGACGGTGCTGCCCAAGGACGAGAAGTGGCCGTTCCTGCTGCGGTTCCCG ATCAGCGCGTTCGGGATGTGCCTCGGGGTGAGCAGCCAGGCGATGCTGTGGAAGACGCTG GCGTCGGCGCCGCCGACGTCGTTCCTGCACGTCAGCCCGGTGGTGAACCACGTGCTGTGG TGGATCTCGCTGGCGCTGATGGGGTTCGTCTCCTTCATCTACCTGCTCAAGGTCGTTTTC TACTTCGAGGCGGTGCGGCGGGAGTTCTACCACCCGATCCGCGCCAACTTCTTCTTCGCG CCGTGGATCGCCTGCCTCTTCCTCGTCCAGGGCGTGCCGCGGCCGGTGACGGAGGTGCAC CACGGCGTCTGGTACGCGCTCATGGCGCCCATCTTCTGCCTGGAGCTCAAGATCTACGGG CAGTGGATGTCCGGCGGCCAGCGGCGGCTGTCCAAGGTGGCGAACCCGTCCAACCACCTC TCCATCGTCGGAAACTTCGTCGGCGCGCTGCTCGGCGCCAAGATGGGGCTCCGCGAGGGC CCCATCTTCTACTTCGCCGTCGGCCTCGCCCACTACATGGTCCTCTTCGTCACGCTCTAC CAGCGCCTCCCCACCAATGTCACCCTCCCCAAGGAGCTCCACCCCGTCTTCTTCCTCTTC GTCGCCGCCCCCAGCGTCGCCTCCATGGCCTGGGCCAAGATCCTCGGCGAGTTCGACTAC GGCGCCCGCATCGCCTACTTCATCGCCCTCTTCCTCTACATGTCACTGGCTGTGAGGATC AACTTCTTCAGGGGATTCCGATTCTCGCTGGCGTGGTGGGCGTACACGTTCCCGATGACC GGCGCGGCGATCGCGACGATCACGTACGCGACGGAGGTGACCAACGTGCTGACGAGGGCG CTCTCCATCGGCCTCTCCGGCATCGCCACCGTCACCGTCGCCGGCCTGCTGGTCACCACC ATGTTCCACGCCTTCGTGCTCAAGGACCTCTTCCCCAACGACGTCTCCATCGCCATCACC CGCAAGAAGCCCAAGTTCAGCAAGATCCTCGCGCACTTCCGCTCATCCAGCTCCGACATG AAGGAGTATGTGCTCTCCATCTCCAAGCCGCCCAGCTCCGACTCCGACTCGTCGGTGTCG TCCAAGGCCACCACCGTGACCGATCCGTCGGTGACCAGAGTCAAGGCGGAGCCCTAA

Peptide Sequence

PEP ID	Os01t0623200-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:24861697:24864291:-1 gene:Os01g0623200 transcript:Os01t0623200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to C4-dicarboxylate transporter/malic acid transport protein. (Os01t0623200-01)
Sequence	MEFGNDVRIRMDGGVYGESEQSSGEAALPRLLIEVPSQVIDGFDCVGGGGDATATATLSE QSKELEMLGEEKDVVISIPAPVYAPRSVSVSAAYEHEGAQIPYSVSLSMPASPSGFHFSQ FGMAAAKAKAVHRDEARVAPAETRFDDAHPPAVGRVQAHSPRLLLNQTRFHSQPILHLSK NDETTRRCDSTRDKRFDQFKTFSGRLERQLSTLRGRPAQEHMTNGEGAPEPNIAEEETEQ VPGADRYFDALEGPELETLRATETTVLPKDEKWPFLLRFPISAFGMCLGVSSQAMLWKTL ASAPPTSFLHVSPVVNHVLWWISLALMGFVSFIYLLKVVFYFEAVRREFYHPIRANFFFA PWIACLFLVQGVPRPVTEVHHGVWYALMAPIFCLELKIYGQWMSGGQRRLSKVANPSNHL SIVGNFVGALLGAKMGLREGPIFYFAVGLAHYMVLFVTLYQRLPTNVTLPKELHPVFFLF VAAPSVASMAWAKILGEFDYGARIAYFIALFLYMSLAVRINFFRGFRFSLAWWAYTFPMT GAAIATITYATEVTNVLTRALSIGLSGIATVTVAGLLVTTMFHAFVLKDLFPNDVSIAIT RKKPKFSKILAHFRSSSSDMKEYVLSISKPPSSDSDSSVSSKATTVTDPSVTRVKAEP

Transcript Sequence

Transcript ID	Os01t0623200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:24861697:24864291:-1 gene:Os01g0623200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to C4-dicarboxylate transporter/malic acid transport protein. (Os01t0623200-01)
Sequence	GAGCCAAAATCGAGCCCGAAACTCCGGAAGCGTACGGGAGAAAAACTTGTTGTTTGCGTT TAGCGAGCTGTGAACTGTTTTGATGGTGCATGCTGAACGCGTGTAGAGAAGTAGAGAGAA ATCCAGGTAAGATTAACTGTAGGTAGGATAGGTTGATATGGCCAGGATCGCCATACGGGA ATGCCCACCCGTGCTTCGGCCGAATTGGCGTGTGATCTGGTTTCGTGAACGGTATGGAGT TCGGCAACGACGTCCGGATCAGAATGGACGGTGGTGTGTACGGGGAGAGCGAGCAATCGT CCGGGGAAGCCGCTCTCCCGCGGCTGCTGATCGAGGTCCCCTCGCAGGTCATCGACGGCT TCGACTGCGTCGGCGGCGGTGGCGACGCCACGGCCACGGCCACGCTCAGCGAGCAGAGCA AGGAACTCGAAATGCTGGGCGAGGAGAAGGACGTCGTGATTAGCATCCCGGCGCCGGTGT ACGCTCCACGATCCGTGTCGGTGTCGGCGGCGTACGAACACGAGGGCGCGCAGATACCGT ACTCCGTGTCGCTGAGCATGCCGGCGTCGCCATCGGGGTTCCACTTCTCGCAGTTCGGGA TGGCGGCGGCGAAGGCGAAGGCCGTCCACCGCGACGAGGCCCGCGTGGCGCCGGCGGAGA CCAGGTTCGACGACGCGCACCCGCCGGCGGTGGGGCGAGTGCAGGCGCACTCCCCGCGGC TGCTGCTGAATCAGACGCGGTTCCACTCGCAGCCCATCCTGCACCTGTCCAAGAACGACG AGACGACGCGGCGGTGCGACAGCACGCGCGACAAGCGGTTCGACCAGTTCAAGACCTTCT CCGGCCGCCTCGAGCGGCAGCTCTCCACCCTGCGCGGCCGGCCGGCGCAGGAGCACATGA CCAACGGCGAGGGCGCCCCCGAGCCGAACATCGCCGAGGAGGAGACGGAGCAGGTCCCCG GCGCCGACCGCTACTTCGACGCCCTGGAGGGCCCCGAGCTGGAGACGCTGAGGGCGACGG AGACGACGGTGCTGCCCAAGGACGAGAAGTGGCCGTTCCTGCTGCGGTTCCCGATCAGCG CGTTCGGGATGTGCCTCGGGGTGAGCAGCCAGGCGATGCTGTGGAAGACGCTGGCGTCGG CGCCGCCGACGTCGTTCCTGCACGTCAGCCCGGTGGTGAACCACGTGCTGTGGTGGATCT CGCTGGCGCTGATGGGGTTCGTCTCCTTCATCTACCTGCTCAAGGTCGTTTTCTACTTCG AGGCGGTGCGGCGGGAGTTCTACCACCCGATCCGCGCCAACTTCTTCTTCGCGCCGTGGA TCGCCTGCCTCTTCCTCGTCCAGGGCGTGCCGCGGCCGGTGACGGAGGTGCACCACGGCG TCTGGTACGCGCTCATGGCGCCCATCTTCTGCCTGGAGCTCAAGATCTACGGGCAGTGGA TGTCCGGCGGCCAGCGGCGGCTGTCCAAGGTGGCGAACCCGTCCAACCACCTCTCCATCG TCGGAAACTTCGTCGGCGCGCTGCTCGGCGCCAAGATGGGGCTCCGCGAGGGCCCCATCT TCTACTTCGCCGTCGGCCTCGCCCACTACATGGTCCTCTTCGTCACGCTCTACCAGCGCC TCCCCACCAATGTCACCCTCCCCAAGGAGCTCCACCCCGTCTTCTTCCTCTTCGTCGCCG CCCCCAGCGTCGCCTCCATGGCCTGGGCCAAGATCCTCGGCGAGTTCGACTACGGCGCCC GCATCGCCTACTTCATCGCCCTCTTCCTCTACATGTCACTGGCTGTGAGGATCAACTTCT TCAGGGGATTCCGATTCTCGCTGGCGTGGTGGGCGTACACGTTCCCGATGACCGGCGCGG CGATCGCGACGATCACGTACGCGACGGAGGTGACCAACGTGCTGACGAGGGCGCTCTCCA TCGGCCTCTCCGGCATCGCCACCGTCACCGTCGCCGGCCTGCTGGTCACCACCATGTTCC ACGCCTTCGTGCTCAAGGACCTCTTCCCCAACGACGTCTCCATCGCCATCACCCGCAAGA AGCCCAAGTTCAGCAAGATCCTCGCGCACTTCCGCTCATCCAGCTCCGACATGAAGGAGT ATGTGCTCTCCATCTCCAAGCCGCCCAGCTCCGACTCCGACTCGTCGGTGTCGTCCAAGG CCACCACCGTGACCGATCCGTCGGTGACCAGAGTCAAGGCGGAGCCCTAAATCGACCCCA AGTATAGCTATCTCGTCGTTAGCTGTACATAAATTCTTTAAATTATGATGTCTTGGGACA AAGATCATCGCCTTAATATGGTTGGACATTACGAGTAGTTAGTAATATAATATAATACGA TCACATATAGTATAATATCCTTGGAGC