Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0622600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:24839124:24843459:1 gene:Os01g0622600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 1 description:Similar to calcium-dependent protein kinase, isoform 2. (Os01t0622600-01)
Sequence

ATGGGCAACCGCACGTCGCGCCACCACCGCGCCGCTCCCGAGCAGCCGCCGCCCCAGCCC
AAGCCGAAGCCTCAGCCGCAGCAGCAGCAGCAGCAGTGGCCGAGGCCGCAGCAGCCGACC
CCGCCGCCGGCGGCGGCGCCGGACGCGGCGATGGGGAGGGTGCTGGGGCGGCCGATGGAG
GACGTCCGCGCGACCTACACCTTCGGGCGCGAGCTCGGGCGGGGCCAGTTCGGGGTCACC
TACCTCGTCACCCACAAGGCCACGGGGAAGCGCTTCGCCTGCAAGTCCATCGCCACGCGG
AAGCTCGCCCACCGCGACGACATCGAGGACGTGCGCCGGGAGGTGCAGATCATGCACCAC
CTCACGGGCCACCGCAACATCGTCGAGCTCCGGGGCGCCTACGAGGACCGCCACTCGGTC
AACCTCATCATGGAGCTCTGCGAGGGCGGGGAGCTCTTCGACCGCATCATCGCCAGGGGG
CACTACTCCGAGCGCGCCGCCGCCGCGCTCTGCCGCGAGATCGTCGCCGTCGTGCACAGC
TGCCACTCCATGGGGGTCTTCCACCGGGATCTCAAGCCGGAGAACTTTTTGTTCCTCAGT
AAAAGCGAGGACTCGCCGCTCAAGGCCACTGACTTCGGTCTTTCCGTTTTCTTCAAGCCT
GGGGAGCATTTTAAGGACCTTGTTGGAAGTGCGTATTATGTTGCACCTGAGGTGCTGAAA
CGAAACTATGGAGCAGAGGCTGACATATGGAGTGCTGGCGTTATTCTTTACATCCTTCTT
TCTGGTGTTCCACCTTTTTGGGCAGAGAGTGAAGATGGTATATTTGATGCCGTATTACGT
GGTCACATTGATTTCTCGTCTGAACCTTGGCCTTCGATATCCAATGGTGCAAAAGATTTG
GTTAAGAAGATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGAAC
CACCCATGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACATTACAGTTATC
AGCAGGATGAAGCAGTTCAGGGCAATGAACAAGCTTAAGAAAGTTGCATTGAAGGTTGTT
GCAGAGAACTTGTCAGATGAAGAGATTACAGGCTTAAAAGAAATGTTCAGATCCTTGGAT
ACTGATAACAGTGGGACAATAACTCTTGAGGAGCTAAGATCTGGTTTACCAAAACTTGGC
ACCAAAATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGGCTGATGTTGATGGAAAT
GGAACCATTGACTATGCTGAGTTCATATCAGCGACAATGCACATGAACAGATTGGAGAAG
GAAGACCACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGATACATAACA
GTAGATGAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGGGACGATAAAACGATTAAG
GAAATCATCGCTGAAGTAGATACTGATCATGATGGAAGAATTAACTACCAGGAGTTTGTC
GCCATGATGAGGAACAACAACCCTGAGATTGCTCCCAACCGGCGGCGCATGTTCTAA

Peptide Sequence

PEP ID

Os01t0622600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:24839124:24843459:1 gene:Os01g0622600 transcript:Os01t0622600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 1 description:Similar to calcium-dependent protein kinase, isoform 2. (Os01t0622600-01)
Sequence

MGNRTSRHHRAAPEQPPPQPKPKPQPQQQQQQWPRPQQPTPPPAAAPDAAMGRVLGRPME
DVRATYTFGRELGRGQFGVTYLVTHKATGKRFACKSIATRKLAHRDDIEDVRREVQIMHH
LTGHRNIVELRGAYEDRHSVNLIMELCEGGELFDRIIARGHYSERAAAALCREIVAVVHS
CHSMGVFHRDLKPENFLFLSKSEDSPLKATDFGLSVFFKPGEHFKDLVGSAYYVAPEVLK
RNYGAEADIWSAGVILYILLSGVPPFWAESEDGIFDAVLRGHIDFSSEPWPSISNGAKDL
VKKMLRQDPKERLTSAEILNHPWIREDGEAPDKPLDITVISRMKQFRAMNKLKKVALKVV
AENLSDEEITGLKEMFRSLDTDNSGTITLEELRSGLPKLGTKISESEIRQLMEAADVDGN
GTIDYAEFISATMHMNRLEKEDHILKAFEYFDKDHSGYITVDELEEALKKYDMGDDKTIK
EIIAEVDTDHDGRINYQEFVAMMRNNNPEIAPNRRRMF

Transcript Sequence

Transcript ID

Os01t0622600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:24839124:24843459:1 gene:Os01g0622600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 1 description:Similar to calcium-dependent protein kinase, isoform 2. (Os01t0622600-01)
Sequence

GGTCGTCTCCGCGGAGCGCGTCTACTACTCGTGCGCTTCTGCTTCCTGTTCAAACCCAAC
GCTCCACCACATCGCCTGCGTTCCCCACCCCGACTGACCCAGCCTCCAGTAGCCATGGGC
AACCGCACGTCGCGCCACCACCGCGCCGCTCCCGAGCAGCCGCCGCCCCAGCCCAAGCCG
AAGCCTCAGCCGCAGCAGCAGCAGCAGCAGTGGCCGAGGCCGCAGCAGCCGACCCCGCCG
CCGGCGGCGGCGCCGGACGCGGCGATGGGGAGGGTGCTGGGGCGGCCGATGGAGGACGTC
CGCGCGACCTACACCTTCGGGCGCGAGCTCGGGCGGGGCCAGTTCGGGGTCACCTACCTC
GTCACCCACAAGGCCACGGGGAAGCGCTTCGCCTGCAAGTCCATCGCCACGCGGAAGCTC
GCCCACCGCGACGACATCGAGGACGTGCGCCGGGAGGTGCAGATCATGCACCACCTCACG
GGCCACCGCAACATCGTCGAGCTCCGGGGCGCCTACGAGGACCGCCACTCGGTCAACCTC
ATCATGGAGCTCTGCGAGGGCGGGGAGCTCTTCGACCGCATCATCGCCAGGGGGCACTAC
TCCGAGCGCGCCGCCGCCGCGCTCTGCCGCGAGATCGTCGCCGTCGTGCACAGCTGCCAC
TCCATGGGGGTCTTCCACCGGGATCTCAAGCCGGAGAACTTTTTGTTCCTCAGTAAAAGC
GAGGACTCGCCGCTCAAGGCCACTGACTTCGGTCTTTCCGTTTTCTTCAAGCCTGGGGAG
CATTTTAAGGACCTTGTTGGAAGTGCGTATTATGTTGCACCTGAGGTGCTGAAACGAAAC
TATGGAGCAGAGGCTGACATATGGAGTGCTGGCGTTATTCTTTACATCCTTCTTTCTGGT
GTTCCACCTTTTTGGGCAGAGAGTGAAGATGGTATATTTGATGCCGTATTACGTGGTCAC
ATTGATTTCTCGTCTGAACCTTGGCCTTCGATATCCAATGGTGCAAAAGATTTGGTTAAG
AAGATGTTGCGGCAAGACCCAAAAGAGCGCCTTACTTCTGCTGAAATTTTGAACCACCCA
TGGATTAGAGAGGATGGAGAAGCCCCAGACAAGCCACTTGACATTACAGTTATCAGCAGG
ATGAAGCAGTTCAGGGCAATGAACAAGCTTAAGAAAGTTGCATTGAAGGTTGTTGCAGAG
AACTTGTCAGATGAAGAGATTACAGGCTTAAAAGAAATGTTCAGATCCTTGGATACTGAT
AACAGTGGGACAATAACTCTTGAGGAGCTAAGATCTGGTTTACCAAAACTTGGCACCAAA
ATTTCTGAATCAGAAATTAGACAGCTGATGGAGGCGGCTGATGTTGATGGAAATGGAACC
ATTGACTATGCTGAGTTCATATCAGCGACAATGCACATGAACAGATTGGAGAAGGAAGAC
CACATACTTAAAGCATTTGAGTATTTTGATAAGGACCACAGCGGATACATAACAGTAGAT
GAGTTGGAAGAAGCTCTGAAGAAGTATGATATGGGGGACGATAAAACGATTAAGGAAATC
ATCGCTGAAGTAGATACTGATCATGATGGAAGAATTAACTACCAGGAGTTTGTCGCCATG
ATGAGGAACAACAACCCTGAGATTGCTCCCAACCGGCGGCGCATGTTCTAACTTCCTTTA
CAATTGTTGAAAGAATACTGTTTGGACATCTTTCCTCATTATATTCCAAGAACACCCCTT
AAGAGGCTTGATCATCTGAGATCCATACACCTGTTGCCAGGGCTTGGACCCATTTGTACT
CAAATGGAGTTGCGCGATATATCATTTGTAGATGCCTGGACCATCATGGATTTCTGAGTG
CTGCTTTGTTATTCGTTGCCTCATCATTCAATTTGGAGTGTAACCTCAACGGGATGATCA
GTTCAACTGCTCTTCCGAGCGTGTTGCGACTTGTGACTATATGCCACTTGATCGTTTGTA
TTAGATCAGGTGTTGTAAAACAGATTTTAGTGATAAGATCAGGCAAGGTTATATTA