Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0620100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:24703771:24708911:-1 gene:Os01g0620100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-19 description:WD40 repeat-like domain containing protein. (Os01t0620100-01)
Sequence

ATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGGCTGGAACCAC
TGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTACGACTCCCAG
TCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCTGAATATCGTG
TGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGGGACGCTATCT
TTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTT
GAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAA
ATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAA
TTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCT
GGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAG
CAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGATT
TGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAG
GATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAGACCATATGAG
ATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTTAAGCGCTGAA
TCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGATGGGGAGGTC
CTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGGTGATGGCATG
GTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGTGCTTGACTGC
AATGTGTCTCACTAG

Peptide Sequence

PEP ID

Os01t0620100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:24703771:24708911:-1 gene:Os01g0620100 transcript:Os01t0620100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-19 description:WD40 repeat-like domain containing protein. (Os01t0620100-01)
Sequence

MAERQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYDSQSQPSPSSKWQAHKHAILNIV
WLPPDYGDAIACVCADGTLSLWEEVSEDDQLPTWRKCKVFESGNSHILHVQFGLQLSSLK
MVTAYSDGQVKVYELLDSLELDKWQLQAEFQNITDPVSRSGKPACTSASIAWSPRRGESQ
QASFAIGFNSDSPNFNSCKIWEFEEAHQRWLPLVELGSPQDKGDIVHAVAWAPNIGRPYE
IIAVATCKGIAIWHIGLSAESDGSLSTENVAVLSGHDGEVLQLEWDMGGMTLASTGGDGM
VKLWQANLNGVWHEQAVLDCNVSH

Transcript Sequence

Transcript ID

Os01t0620100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:24703771:24708911:-1 gene:Os01g0620100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-19 description:WD40 repeat-like domain containing protein. (Os01t0620100-01)
Sequence

AGTGTCCGTACACCCAACCCACCTGGGCCGCCGCGTCTCGTTCTCTCCTCCAACAAACCC
ACCTCCGAGCAGGCTGCGTGCTCTCGCCGCCGCCGCCACCGTAGGCGAGGGCATCTCATC
TCAGGGAGGAATGGCGGAGCGGCAGGTGGCGGAGCTGGGGGCCGGCGCGGCGTGCGTAGG
CTGGAACCACTGCGGCCGCCGCCTCGCCGCCGGCGCCGTCGACGGCTTCGTCTCCGTCTA
CGACTCCCAGTCCCAGCCGTCGCCTTCCTCCAAGTGGCAGGCCCACAAGCATGCGATCCT
GAATATCGTGTGGCTTCCTCCGGACTATGGGGATGCTATAGCTTGTGTTTGTGCTGATGG
GACGCTATCTTTGTGGGAGGAGGTCAGTGAAGATGATCAACTTCCAACCTGGAGGAAATG
TAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTC
TAGTCTAAAAATGGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGA
CTCGTTGGAATTAGACAAGTGGCAGCTTCAGGCGGAGTTCCAGAACATTACAGATCCTGT
TTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGG
TGAAAGTCAGCAGGCTAGTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTC
TTGTAAGATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGG
CTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTCCTAACATCGGCAG
ACCATATGAGATCATAGCAGTTGCGACATGTAAAGGAATCGCAATCTGGCATATAGGCTT
AAGCGCTGAATCTGACGGCAGCCTGTCAACTGAGAATGTGGCTGTACTTTCTGGCCATGA
TGGGGAGGTCCTGCAACTGGAATGGGACATGGGCGGTATGACACTCGCATCGACCGGAGG
TGATGGCATGGTTAAGCTATGGCAGGCTAACCTGAATGGAGTTTGGCATGAACAAGCTGT
GCTTGACTGCAATGTGTCTCACTAGGGTTGCATATCTTTTTTTTCTGGTTGGAACTGGGG
CCTTGGGGGATTCCCAGCTCCCAAGTTGTGCAAACAAGCATTTAAGTGGATTGCTTATCA
ATGTTAAAGAATTCTGCAAGATCTCTTTCAATTATACTGTCGTGCACGTGGTTGGTTTT