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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0617900-03
CDS Infomation

cds chromosome:IRGSP-1.0:1:24573017:24575518:1 gene:Os01g0617900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to oxygen-evolving complex-related. (Os01t0617900-01);Similar to predicted protein. (Os01t0617900-02);Similar to oxygen-evolving complex-related. (Os01t0617900-03)
Sequence

ATGGCGGCCGCTGCTCTTCTCTCCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCC
TCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCG
CGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTG
AGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTG
CTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTT
GCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCT
TTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGA
AAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTA
TCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAAT
TCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGG
ATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCT
GTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTA
GTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCC
TGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAG
TGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCT
ACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGA

Peptide Sequence

PEP ID

Os01t0617900-03
PEP Infomation

pep chromosome:IRGSP-1.0:1:24573017:24575518:1 gene:Os01g0617900 transcript:Os01t0617900-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to oxygen-evolving complex-related. (Os01t0617900-01);Similar to predicted protein. (Os01t0617900-02);Similar to oxygen-evolving complex-related. (Os01t0617900-03)
Sequence

MAAAALLSPPPSPSPSPTPSSLHPRQALRFAVGTGGGGRARATSTGTRRRAALVPCSSSV
SARGPASGGDGLALERRRLLLSGLVSSFVLVLPVSDSHAVAEMDEDVKMATLVDPINAYS
FLYPVELPGKKFTFKWVESRKPERYSSAAPLSPDARQRIVSERVDMIHNVVISVSIGPPN
SRFPPSKDKSKWDPKDVADWILAEKSSLKVTTGQRMTESSVLDAHSSDVDGEPYWYYEYL
VRKSPTQSAPEPNLFRHNVACTAERDGYLYSLNASTLSKQWESMGPSLQKTVASFHLLPP
TENYVPPYQDPWRFW

Transcript Sequence

Transcript ID

Os01t0617900-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:24573017:24575518:1 gene:Os01g0617900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to oxygen-evolving complex-related. (Os01t0617900-01);Similar to predicted protein. (Os01t0617900-02);Similar to oxygen-evolving complex-related. (Os01t0617900-03)
Sequence

AGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGC
TGCTCTTCTCTCCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCC
CAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTC
GACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGG
CCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCT
CGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGA
TGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCC
AGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACG
ATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGT
TGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCC
GCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGA
AAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGC
ACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATC
TCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGA
ACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTAT
GGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTA
TGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTT
TACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAA
TGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTG
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