Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0617700-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:24559329:24568659:1 gene:Os01g0617700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:centromere protein C description:Similar to CENP-C (Fragment). (Os01t0617700-01)
Sequence	ATGGCCTCGGCTGATCCCTTCCTAGCCGCATCGTCCCCGGCGCACCTCCTCCCCCGAACC CTCGGCCCCGCCGCGCCGCCCGGGACCGCCGCGTCCCCCTCCGCGGCCCGCGGGGCGCTG CTCGACGGCATCTCCCGACCACTGAAAGGGTCCAAGGAGCTAGTTGAGCAGGCTAGAATG GCGATGAAGGCTGTCGGGGACATAGGGAAGCTCTATGGCGGCGATGGAGCGGGGGTGGCT GCCGCCGCTGCGGATGGCAAGAACAACCAGCTGGGGAGAAGGCCTGCGCCGGACCGCAAG CGATTTCGGCTCAAGACCAAGCCCCCCGCGAACAAACCGGTGCAAAATGTGGACTACACA GAGTTACTGAACATTGAAGATCCTGATGAATACTTTTTGACCCTGGAAAAGCTCGAAAGA GCTGATAAGGAGATTAAAAGGTTAAGGGGTGAGGTTCCAACTGAAGGAACATATAATAAC CGAGGCATTGAACCACCTAAGCTACGACCTGGGCTGTTGAGGAGAAAATCAGTCCATTCT TACAAGTTTAGCGCCAGCTCTGATGCCCCAGATGCCATTGAAGCACCTGCTTCCCAAACA GAAACTGTGACAGAATCACAGACTACCCAAGATGATGTGCATGGCTCAGCTCATGAAATG ACAACAGAGCCTGTTTCTTCAAGATCTAGCCAAGATGCTATACCAGATATCTCAGCGAGA GAAGATTCATTTGTTTGGAAGGATAACAGTTTCACCTTGAATTACTTACTCTCCGCATTC AAAGATCTGGATGAAGACGAAGAAGAAAATTTACTCCGAAAGACTTTACAGATTAAAGAA ATAAGCATAGGAAAAGTTTGTCTCCCTGACTTCAATGTTCCAGGTGACACGCCTGCAAGC AACACTACTGAGCAGAAAAATCCCATGAGTGATCATGCATTAGAAAGAACTGCACCTGGA AGCAACCTTGCTCGAATTTCACAATTGGAGAAACGCATTTTTGTTGGAGATGCCCTGGAA GATAAACATGCAGATCTTTCAAAAGATGATGAATCTGATGGGTCTCCGGAAAGTCTGCTG TGTAAACAATCACCTGTGCGACGTTCATCTGATGCAGTGGGTTTGATGATCAATGAGGGC TCTACTGCAATGGAGACCCCAAGTCCTAGCATCAAATCTCCAGAGCATGTGCTTGAATCT GAATCGAACCCTCCAGATGGTGTAACAACAGATGAACAGCCAACAGAAAATTCACCAATT GGTGTGGACAGAGATAGTGAACTTGTCAAAGAGAAGGGCACATCTTCCAGGCATAGTGTT TCGTTAGAGGAAGATGTTATGCCAATAGATTGCACGGTTTCTCCTCCCGATCATTTGGAA GGTGGCTCGACTGAAGTGTTGACGAACATTACAAGTAGAAATGTATCTCCATTGCATCAT GGAGATGGCAATTCTGAACATCAGGAAATAGTTGGAGGTGATGTGGCCCAAGATAATCCG ATCCATACACTGGAAACACCCCCAGAAGATACTCCACAGAATCAATCTGAAATACATCGT GGAAGCATTGAGAAACTGGCAGTTGATAAAAGCAACGCACTCTCCCCAAGTCAAGGGAAG CAACATAGAGGCAAAAATAAGAAGCAGCCATCGAAGAGAGGAAAAAGAGAGACAGATAAT CCGATCCATACATCAGAAACACCCCCAATGGATACTAATCCACAGAATCAATCTGAAATA CATCGTGGAAGCATTGAGAAACTGGCAGTTGATAAAAGCAATGCACTCTCCCCAAGTAAA GGCAAGGAACAAAGAGGCAAAAATAAGAAGCAGCCATCGAAGAGAGGAAAAAGAAAGACA GACAACCTGATCCATACACCGGAAATACCCCCAGAAGATACAGACAACACAGTACATACA CCGGAAATTCCTCCAGAAGATACTTATCCACAGAATCAATCTGAAATACATCGTGGAAAC ACTGAGAAACTGGCAGTTGATATAAACAATGCACTCTCCCCAAGTAAAGGCAAGGAACAA AGAGGAAACAATAAGAAGCAGCCATCAAAGCGACAAAAAAGAGCAGCAGGTGAGGCAGGT GATTTGGAAACACACGCACCAAACTTTGAACCAGAGATTCAACCTCATGTGCAGGACACA GATGTTGAGCAACAGCCAGCTTGTACAAGCCAGTCACCATCACCGAGTAATGGTACGAGT AAAAATGAAGTTCGAAAGAGAAATAAGAAGCAAGATTTGAACAGAAGAAAAAGCTTGGCA GATGCGGGTCTTACTTGGCAAGCGGGTGTTAGACGAAGCACACGAATACGGTCAAAACCT TTGCAGCATTGGCTTGGTGAAAGATTTATATATGGGCGTATACATGGAACAATGGCCACA GTCATCGGTGTTAAATCATTCTCTCCTAGTCAGGAAGGCAAAGGCCCATTGAGGGTGAAA TCCTTTGTTCCTGAACAGTTCTCAGATTTGTTAGCCGAATCTGCCAAGTACTGA

Peptide Sequence

PEP ID	Os01t0617700-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:24559329:24568659:1 gene:Os01g0617700 transcript:Os01t0617700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:centromere protein C description:Similar to CENP-C (Fragment). (Os01t0617700-01)
Sequence	MASADPFLAASSPAHLLPRTLGPAAPPGTAASPSAARGALLDGISRPLKGSKELVEQARM AMKAVGDIGKLYGGDGAGVAAAAADGKNNQLGRRPAPDRKRFRLKTKPPANKPVQNVDYT ELLNIEDPDEYFLTLEKLERADKEIKRLRGEVPTEGTYNNRGIEPPKLRPGLLRRKSVHS YKFSASSDAPDAIEAPASQTETVTESQTTQDDVHGSAHEMTTEPVSSRSSQDAIPDISAR EDSFVWKDNSFTLNYLLSAFKDLDEDEEENLLRKTLQIKEISIGKVCLPDFNVPGDTPAS NTTEQKNPMSDHALERTAPGSNLARISQLEKRIFVGDALEDKHADLSKDDESDGSPESLL CKQSPVRRSSDAVGLMINEGSTAMETPSPSIKSPEHVLESESNPPDGVTTDEQPTENSPI GVDRDSELVKEKGTSSRHSVSLEEDVMPIDCTVSPPDHLEGGSTEVLTNITSRNVSPLHH GDGNSEHQEIVGGDVAQDNPIHTLETPPEDTPQNQSEIHRGSIEKLAVDKSNALSPSQGK QHRGKNKKQPSKRGKRETDNPIHTSETPPMDTNPQNQSEIHRGSIEKLAVDKSNALSPSK GKEQRGKNKKQPSKRGKRKTDNLIHTPEIPPEDTDNTVHTPEIPPEDTYPQNQSEIHRGN TEKLAVDINNALSPSKGKEQRGNNKKQPSKRQKRAAGEAGDLETHAPNFEPEIQPHVQDT DVEQQPACTSQSPSPSNGTSKNEVRKRNKKQDLNRRKSLADAGLTWQAGVRRSTRIRSKP LQHWLGERFIYGRIHGTMATVIGVKSFSPSQEGKGPLRVKSFVPEQFSDLLAESAKY

Transcript Sequence

Transcript ID	Os01t0617700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:24559329:24568659:1 gene:Os01g0617700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:centromere protein C description:Similar to CENP-C (Fragment). (Os01t0617700-01)
Sequence	GGGAGCTCTCCGCCACCCCGCGCGGCGGCGAGATCGAGGCGCCGCCGCCGCCGTATGGCC TCGGCTGATCCCTTCCTAGCCGCATCGTCCCCGGCGCACCTCCTCCCCCGAACCCTCGGC CCCGCCGCGCCGCCCGGGACCGCCGCGTCCCCCTCCGCGGCCCGCGGGGCGCTGCTCGAC GGCATCTCCCGACCACTGAAAGGGTCCAAGGAGCTAGTTGAGCAGGCTAGAATGGCGATG AAGGCTGTCGGGGACATAGGGAAGCTCTATGGCGGCGATGGAGCGGGGGTGGCTGCCGCC GCTGCGGATGGCAAGAACAACCAGCTGGGGAGAAGGCCTGCGCCGGACCGCAAGCGATTT CGGCTCAAGACCAAGCCCCCCGCGAACAAACCGGTGCAAAATGTGGACTACACAGAGTTA CTGAACATTGAAGATCCTGATGAATACTTTTTGACCCTGGAAAAGCTCGAAAGAGCTGAT AAGGAGATTAAAAGGTTAAGGGGTGAGGTTCCAACTGAAGGAACATATAATAACCGAGGC ATTGAACCACCTAAGCTACGACCTGGGCTGTTGAGGAGAAAATCAGTCCATTCTTACAAG TTTAGCGCCAGCTCTGATGCCCCAGATGCCATTGAAGCACCTGCTTCCCAAACAGAAACT GTGACAGAATCACAGACTACCCAAGATGATGTGCATGGCTCAGCTCATGAAATGACAACA GAGCCTGTTTCTTCAAGATCTAGCCAAGATGCTATACCAGATATCTCAGCGAGAGAAGAT TCATTTGTTTGGAAGGATAACAGTTTCACCTTGAATTACTTACTCTCCGCATTCAAAGAT CTGGATGAAGACGAAGAAGAAAATTTACTCCGAAAGACTTTACAGATTAAAGAAATAAGC ATAGGAAAAGTTTGTCTCCCTGACTTCAATGTTCCAGGTGACACGCCTGCAAGCAACACT ACTGAGCAGAAAAATCCCATGAGTGATCATGCATTAGAAAGAACTGCACCTGGAAGCAAC CTTGCTCGAATTTCACAATTGGAGAAACGCATTTTTGTTGGAGATGCCCTGGAAGATAAA CATGCAGATCTTTCAAAAGATGATGAATCTGATGGGTCTCCGGAAAGTCTGCTGTGTAAA CAATCACCTGTGCGACGTTCATCTGATGCAGTGGGTTTGATGATCAATGAGGGCTCTACT GCAATGGAGACCCCAAGTCCTAGCATCAAATCTCCAGAGCATGTGCTTGAATCTGAATCG AACCCTCCAGATGGTGTAACAACAGATGAACAGCCAACAGAAAATTCACCAATTGGTGTG GACAGAGATAGTGAACTTGTCAAAGAGAAGGGCACATCTTCCAGGCATAGTGTTTCGTTA GAGGAAGATGTTATGCCAATAGATTGCACGGTTTCTCCTCCCGATCATTTGGAAGGTGGC TCGACTGAAGTGTTGACGAACATTACAAGTAGAAATGTATCTCCATTGCATCATGGAGAT GGCAATTCTGAACATCAGGAAATAGTTGGAGGTGATGTGGCCCAAGATAATCCGATCCAT ACACTGGAAACACCCCCAGAAGATACTCCACAGAATCAATCTGAAATACATCGTGGAAGC ATTGAGAAACTGGCAGTTGATAAAAGCAACGCACTCTCCCCAAGTCAAGGGAAGCAACAT AGAGGCAAAAATAAGAAGCAGCCATCGAAGAGAGGAAAAAGAGAGACAGATAATCCGATC CATACATCAGAAACACCCCCAATGGATACTAATCCACAGAATCAATCTGAAATACATCGT GGAAGCATTGAGAAACTGGCAGTTGATAAAAGCAATGCACTCTCCCCAAGTAAAGGCAAG GAACAAAGAGGCAAAAATAAGAAGCAGCCATCGAAGAGAGGAAAAAGAAAGACAGACAAC CTGATCCATACACCGGAAATACCCCCAGAAGATACAGACAACACAGTACATACACCGGAA ATTCCTCCAGAAGATACTTATCCACAGAATCAATCTGAAATACATCGTGGAAACACTGAG AAACTGGCAGTTGATATAAACAATGCACTCTCCCCAAGTAAAGGCAAGGAACAAAGAGGA AACAATAAGAAGCAGCCATCAAAGCGACAAAAAAGAGCAGCAGGTGAGGCAGGTGATTTG GAAACACACGCACCAAACTTTGAACCAGAGATTCAACCTCATGTGCAGGACACAGATGTT GAGCAACAGCCAGCTTGTACAAGCCAGTCACCATCACCGAGTAATGGTACGAGTAAAAAT GAAGTTCGAAAGAGAAATAAGAAGCAAGATTTGAACAGAAGAAAAAGCTTGGCAGATGCG GGTCTTACTTGGCAAGCGGGTGTTAGACGAAGCACACGAATACGGTCAAAACCTTTGCAG CATTGGCTTGGTGAAAGATTTATATATGGGCGTATACATGGAACAATGGCCACAGTCATC GGTGTTAAATCATTCTCTCCTAGTCAGGAAGGCAAAGGCCCATTGAGGGTGAAATCCTTT GTTCCTGAACAGTTCTCAGATTTGTTAGCCGAATCTGCCAAGTACTGAGGTCCTGGCCCG GGAAAGTCCCTATCTTCCTTTCTTTGGACAAGTTGCATTCTTCGACATGCATGGCTCGCG CAACCTGTGATCTGTTCCGTATCTATGTGTTACTTTTGCTGTTAATTTTTCGTCATTTGA GGTGCTTCCTCCTATATTGTAGAGCTAACTCTGTGTAGAAGTGTTTGTATCTGTGGAGTT GCAGTGTAATGCATACATGCTATGAACTTGCATACATGATTTATTTTTTTTAAAAGGAAG CTGCTCGGAGTCGGGGCCCGGGACTGCCCATTTTCATTTGTAGCTGTTGTGTGTTTTCAA AAGGTAATTTCGC