Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0616800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:24496188:24497895:1 gene:Os01g0616800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os01t0616800-01)
Sequence

ATGCTGCGCCGCCTACCGCTCCGCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCC
ATCCCCCACCGCGTCCTTCGCGGCGCGTGCACCACCGCGCCAGCCTCCAGGCCCCCGCCC
TACCCGCTCTCCCCGTCCGACCTCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCC
GCGGGGAACGTCCCCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCC
ACGGAGCGCCTCCCGTTCTCCCCGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACC
CCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCC
CTCGCCACGCCGCTCCTCGGCCACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCC
GTCGTCCGCTGGCTCTGCCGCCCGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCT
GTCGCCGTCGCGGGGCTCTGCCGGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGG
GAGATGGCCGTGGACGGGATACGGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCG
ATGCTGCAGGACGCGAGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCG
GACTCCGGCAAGCTGGCTGAGCTGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGA

Peptide Sequence

PEP ID

Os01t0616800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:24496188:24497895:1 gene:Os01g0616800 transcript:Os01t0616800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os01t0616800-01)
Sequence

MLRRLPLRLAPTLAGGGGGAIPHRVLRGACTTAPASRPPPYPLSPSDLDAVSALLPRLVS
AGNVPAAGRLLTAALLLPGSTERLPFSPLAAHLASMPTLTPAFALLTAIRHHPLRPSPLP
LATPLLGHLLSRRRAREAASVVRWLCRPDSPQRPDSATFAVAVAGLCRLEDPRNALAALR
EMAVDGIRTSAKLRESVRDAMLQDARIEEAWALEAAMKQPDSGKLAELVQKLLEEWED

Transcript Sequence

Transcript ID

Os01t0616800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:24496188:24497895:1 gene:Os01g0616800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os01t0616800-01)
Sequence

ACGGCCCAATCCAGCCGCGCCTCTCCGTGGCCCAGAAGATGCTGCGCCGCCTACCGCTCC
GCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCCATCCCCCACCGCGTCCTTCGCG
GCGCGTGCACCACCGCGCCAGCCTCCAGGCCCCCGCCCTACCCGCTCTCCCCGTCCGACC
TCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCCGCGGGGAACGTCCCCGCCGCCG
GCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCCACGGAGCGCCTCCCGTTCTCCC
CGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCG
CCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCC
ACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCCGTCGTCCGCTGGCTCTGCCGCC
CGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGCCGTCGCGGGGCTCTGCC
GGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCGTGGACGGGATAC
GGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCGATGCTGCAGGACGCGAGGATCG
AGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCGGACTCCGGCAAGCTGGCTGAGC
TGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGAGACATTGCCGAGGTCGAAGGATATT
GGTTCTCCCTTGCTTCTCGATCAAGGCACAACGTGTTGAAAAATGGACTTTTTTCAGAAC
AAAGAACAGACAGTTCTCCCTAAACAGAGAGTACAAAGCTTCGGGTTTATAAGAACTTGC
AAGATTAGGATTACAAAGCTTCTAGTTTATAAAAACTTGCAAGATTAGGATTAGCGATTG
ATTTATCTATCAAAGAGATGTTTATAAGAACTTGCAAGATTAGGATTAGCGATTGGTTTA
TCTATCAAAGAGATGGTTTATAAGAGATGATAAGTCACCTGTACAATGTCGTGATTC