Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0616500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:24480898:24483661:1 gene:Os01g0616500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L22. (Os01t0616500-01)
Sequence

ATGGTGGGCTGGCGGGCGGCGGGCGGCGCTCGTGCCGTTCTTCGCCGGCTCAGCGCGGCG
GCGGAGGCGGCGGCGAAGCAGGACGGCCGTGTGTTCGCTGCCAGCTATAGCGGCAGCAGT
GGCGGCGTGAATGCTCCGTTTGGCTTGGGCCAATATGCAAACCTTTTGAGGGCACAAGCT
TTTGCATCCAGGGGAGTCGCGCTGAACTTCCATCAGCTGATCCGCAATGCTGGAATATCT
ACCACAAGGAACCTGCTTGCTGCAGATGATGCTATGGTTCCTGTTTCTTCTCCTTTGACA
CCTCCACTTGGTGATGGAGAACAAACTGACAAAAAGGGAGCAATTGTTAAGCGGCTGAAG
GTCCAAGCCATCAAGAAGGATATCAAGCAGAGCCCCAAGAAGGTGAATCTGGTAGCAAAG
CTGGTTCGAGGAATGCGTGTGGAAGATGCCCTGTTGCAGTTGCAAGTGACAGTTAAAAGG
GCTGCAAAAACTGTATATCAGGTGATTCATTCTGCTCGTGCCAATGCAGCTCACAATCAC
GGACTGGATCCTGATAAACTTATTGTGGAAGAGGCTTTTGTTGGGAAAGGACTTTACCTG
AAGAGGTTGTCCTACCATGCCAAAGGGCGGTGTGGCGTCATGGTGAGACCGAGGTGCAGA
CTGACAGTAGTGGTTCGAGAGGCTACCGCTGAGGAAGAGGCAAAGATCGCGAAACTCAGA
GTCAGCAACTATAAGAAGCTGACCAGAAAGGAGAAGCAGCTAATGCCGCACCGTCTTATC
GAGGTTAGCCCGAGGTGGGCTCGCAAGAGGAAAGAGGAGGCTGGTGCTGCTGCGTAG

Peptide Sequence

PEP ID

Os01t0616500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:24480898:24483661:1 gene:Os01g0616500 transcript:Os01t0616500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L22. (Os01t0616500-01)
Sequence

MVGWRAAGGARAVLRRLSAAAEAAAKQDGRVFAASYSGSSGGVNAPFGLGQYANLLRAQA
FASRGVALNFHQLIRNAGISTTRNLLAADDAMVPVSSPLTPPLGDGEQTDKKGAIVKRLK
VQAIKKDIKQSPKKVNLVAKLVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAAHNH
GLDPDKLIVEEAFVGKGLYLKRLSYHAKGRCGVMVRPRCRLTVVVREATAEEEAKIAKLR
VSNYKKLTRKEKQLMPHRLIEVSPRWARKRKEEAGAAA

Transcript Sequence

Transcript ID

Os01t0616500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:24480898:24483661:1 gene:Os01g0616500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 50S ribosomal protein L22. (Os01t0616500-01)
Sequence

GACTCCCCCCAAAACCCACGCCGCCGCCGCCGTCTCTTCCCTCCCTTCTCCGCCGCAGCC
GCCGTATCCCCCCTCTCTCTCCGGGAGCTGAAAGCGCCCGAGGAGGAGATCAGGTTCTTT
GGCCATGGTGGGCTGGCGGGCGGCGGGCGGCGCTCGTGCCGTTCTTCGCCGGCTCAGCGC
GGCGGCGGAGGCGGCGGCGAAGCAGGACGGCCGTGTGTTCGCTGCCAGCTATAGCGGCAG
CAGTGGCGGCGTGAATGCTCCGTTTGGCTTGGGCCAATATGCAAACCTTTTGAGGGCACA
AGCTTTTGCATCCAGGGGAGTCGCGCTGAACTTCCATCAGCTGATCCGCAATGCTGGAAT
ATCTACCACAAGGAACCTGCTTGCTGCAGATGATGCTATGGTTCCTGTTTCTTCTCCTTT
GACACCTCCACTTGGTGATGGAGAACAAACTGACAAAAAGGGAGCAATTGTTAAGCGGCT
GAAGGTCCAAGCCATCAAGAAGGATATCAAGCAGAGCCCCAAGAAGGTGAATCTGGTAGC
AAAGCTGGTTCGAGGAATGCGTGTGGAAGATGCCCTGTTGCAGTTGCAAGTGACAGTTAA
AAGGGCTGCAAAAACTGTATATCAGGTGATTCATTCTGCTCGTGCCAATGCAGCTCACAA
TCACGGACTGGATCCTGATAAACTTATTGTGGAAGAGGCTTTTGTTGGGAAAGGACTTTA
CCTGAAGAGGTTGTCCTACCATGCCAAAGGGCGGTGTGGCGTCATGGTGAGACCGAGGTG
CAGACTGACAGTAGTGGTTCGAGAGGCTACCGCTGAGGAAGAGGCAAAGATCGCGAAACT
CAGAGTCAGCAACTATAAGAAGCTGACCAGAAAGGAGAAGCAGCTAATGCCGCACCGTCT
TATCGAGGTTAGCCCGAGGTGGGCTCGCAAGAGGAAAGAGGAGGCTGGTGCTGCTGCGTA
GCATGGCTTCCCATTTGCAGGATGTCTGCCTTCATTGGCCTTGAAGCGGTGAGTAGCCGC
ATATGCTGAAATTTACCCAAGAACAATTGTAGCTCTCTCAAGAATGAATTCAAAGGTCTC
ATTTGTCAGGCCTGTCTTTGTTCTGTTTGTTTCATCTGTATGAAATTTGTCTCATGAAGC
ATAGGAAACTGTGGCATTGCCCACGATTCTACTCAGAATGAATAATGTCACCTCTG